Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2116
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    27   3.7  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   3.7  

>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 571 KKNQ*PDYRYKNI*LKLDDTVILFRLYTHVTGPSSRREFRDKCYY*NYLQRL 416
           K+N   +Y Y +     +D  +LF L T +   + ++E     YY  YLQRL
Sbjct: 252 KRNDKENYNYPDF---SNDNELLFSLATLIVENNPKKENIIPKYYLRYLQRL 300


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 319 GQ*SSYGALLWKFQTFIFYFGHIY 248
           GQ S YG+++   QTFIF   H+Y
Sbjct: 329 GQLSLYGSIISIIQTFIFDRHHLY 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,152
Number of Sequences: 5004
Number of extensions: 65039
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)