Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2115
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   1.8  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    25   3.2  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   4.3  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    24   7.4  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    24   9.8  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 266  LSLIRYNYILTAGRRPYYVVLGINARQ 186
            LSLIR+  ILT+G   Y+V  G+ + Q
Sbjct: 1480 LSLIRFG-ILTSGEVDYHVARGVRSEQ 1505


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 176 FIEQCSRAHVYYNNTRFAEKRPEH 105
           F  +  R  +Y N+TR  E RP H
Sbjct: 180 FFNEVYRHFLYINSTRIYEDRPSH 203


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 306 NVKILHTLNGESVICDHIFSA 368
           +V++LHTL   SVIC   FSA
Sbjct: 277 SVQLLHTLEHTSVICYVRFSA 297


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 279 FFSGGIF-LKNVKILHTLNGES 341
           FFS G F L N  + H+LNG+S
Sbjct: 110 FFSEGSFNLPNSNMSHSLNGDS 131


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 307 FFKNIPPEKKAT*SYHSYDIT 245
           F K+IPP K+ T S    D+T
Sbjct: 366 FMKSIPPSKRPTKSTSLIDVT 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,419
Number of Sequences: 5004
Number of extensions: 25538
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)