Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2114
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   0.86 
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   6.1  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.0  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 113 NVLASKTSEKVLPPEYHL*KVRNNVRYPTGSRAPEV 220
           N + S T++++  P+    KV  +   PT S +PEV
Sbjct: 91  NNVVSSTNQEIRGPKRKTWKVEEDSPSPTSSVSPEV 126


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 234 EALEGASGSXKLYLXIVLTTSGL 302
           E++  ASG   LYL I + T G+
Sbjct: 64  ESISLASGWLDLYLGITIQTLGI 86


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 329 LPTQKIGSSYIRIKLFIIWAYL 394
           LPT ++G+SY+ + + +   +L
Sbjct: 209 LPTGRLGASYVFVVIDVFSKFL 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,140
Number of Sequences: 336
Number of extensions: 3116
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)