Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2114
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0104 - 6802017-6802352,6802756-6803650,6803839-6803988,680...    31   0.70 
03_06_0321 + 33112793-33113026,33113166-33113546                       29   3.7  
05_05_0007 - 21465506-21466273                                         28   6.5  
03_02_0314 + 7398247-7400877                                           27   8.7  
01_01_1014 - 8022787-8023935                                           27   8.7  

>02_02_0104 -
           6802017-6802352,6802756-6803650,6803839-6803988,
           6804099-6804349
          Length = 543

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 323 PGLPTQKIGSSYIRIKLFIIWAYLPSW 403
           PGLP   +GSS   + +F+++ Y P W
Sbjct: 18  PGLPVLLLGSSLALLAVFLVYFYAPFW 44


>03_06_0321 + 33112793-33113026,33113166-33113546
          Length = 204

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 319 RPRLADTKNRELLYPYQIIYN-LGLFTFMVPYIGRLGLCAFDF*IL 453
           R + A    R   +P  I++  L L ++++P+IG +G+C  D  IL
Sbjct: 5   RSQPAPIDPRRARFPCCIVWTPLPLISWLIPFIGHIGICREDGVIL 50


>05_05_0007 - 21465506-21466273
          Length = 255

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 352 APDFLCRQAGVASTTFSSPEVVSTXIKYN--LXEPEAPSSASGKSSDFRRPASGG 194
           A D L  ++ V++T     + +   ++ +  L EP APSS+       RR A GG
Sbjct: 87  ASDSLSTESDVSATAEDMADAIVRGLRSDRLLFEPRAPSSSILDKKPVRRAAGGG 141


>03_02_0314 + 7398247-7400877
          Length = 876

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 106 AIQRFSVENLGKGTPARVPLVKSTK*RAVSH 198
           ++  F VE+ G G+PA VP  K     AV H
Sbjct: 192 SVNWFKVESRGSGSPALVPAAKQAFDAAVVH 222


>01_01_1014 - 8022787-8023935
          Length = 382

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 149 PPEYHL*KVRNNVRYPTGSRAPEVARLSGSARGRLGFVQI 268
           PP+ H   +  +   P G+   E  R  G + GRL +VQI
Sbjct: 230 PPDLHYVPLPQDSELPAGTPDLEKRRCVGVSAGRLRYVQI 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,587,122
Number of Sequences: 37544
Number of extensions: 311682
Number of successful extensions: 613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)