Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2113
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.1  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   3.7  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   3.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   3.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.9  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   6.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   6.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   8.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   8.5  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 113 KTYSAVNVLRQK*LIVKKRQNMAVVKTPVLKVILCGEYGVGKSSLFRRFINNTF 274
           K    ++++R+K +I +KR+N     TP + +I+ G+      +L   F   T+
Sbjct: 451 KDRKIMDMVREK-IIEEKRKNKNKNLTPAVNIIVKGDVAGSVEALLDIFDTYTY 503


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 488 KCYSKYETMK 459
           KC+ KY+TMK
Sbjct: 121 KCFGKYKTMK 130


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 488 KCYSKYETMK 459
           KC+ KY+TMK
Sbjct: 121 KCFGKYKTMK 130


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 494 SSKCYSKYETMKH 456
           +S C+S+YE ++H
Sbjct: 227 TSSCHSRYEDLRH 239


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 267 LLMNLRNNELFPTPYSPHKITFNTGVFTTA 178
           LL N ++ + F    +  ++  N+G+FTTA
Sbjct: 114 LLYNAKDFQTFYKTAAWARLRMNSGMFTTA 143


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 267 LLMNLRNNELFPTPYSPHKITFNTGVFTTA 178
           LL N ++ + F    +  ++  N+G+FTTA
Sbjct: 114 LLYNAKDFQTFYKTAAWARLRMNSGMFTTA 143


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 422 AEAAILVFLLDNASSFHILSNIYLKLYLMQKTQRYFYVEIN 544
           A  A + FL    +S   +SN   +L L Q  Q+    EIN
Sbjct: 295 AAQAFVFFLAGFETSSTTMSNALYELALNQDVQKKLREEIN 335


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +2

Query: 98  NYDTYKTYSAVNVLRQK*LIVKKRQNMAVVKTPVLKVILCGEY 226
           NY+ Y  Y+  N       +  K   + + + PV   I CG +
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYKNYIINIEQIPVPVPIYCGNF 368


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 488 KCYSKYETMK 459
           KC++KY+T+K
Sbjct: 121 KCFAKYKTLK 130


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -2

Query: 276 TKVLLMNLRNNELFPTPYSPHKITFNT 196
           +++++ +L+N++L      PH I  N+
Sbjct: 152 SQIVVFDLKNSKLLKQVKIPHDIAINS 178


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 494 SSKCYSKYETMKH 456
           +S C+S+YE  +H
Sbjct: 227 TSSCHSRYEDSRH 239


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 494 SSKCYSKYETMKH 456
           +S C+S+YE  +H
Sbjct: 227 TSSCHSRYEDSRH 239


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 494 SSKCYSKYETMKH 456
           +S C+S+YE  +H
Sbjct: 227 TSSCHSRYEDSRH 239


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 494 SSKCYSKYETMKH 456
           +S C+S+YE  +H
Sbjct: 227 TSSCHSRYEDSRH 239


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 494 SSKCYSKYETMKH 456
           +S C+S+YE  +H
Sbjct: 227 TSSCHSRYEDSRH 239


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 494 SSKCYSKYETMKH 456
           +S C+S+YE  +H
Sbjct: 227 TSSCHSRYEDSRH 239


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 494 SSKCYSKYETMKH 456
           +S C+S+YE  +H
Sbjct: 227 TSSCHSRYEDSRH 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,298
Number of Sequences: 438
Number of extensions: 3763
Number of successful extensions: 19
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)