Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2111
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    30   0.29 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   2.1  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.1  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.4  

>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 520 STIINWNCKFVHYYDCIYLYFYMYTYTSI 606
           S + NW+C+ +  Y  +  + ++Y+YTS+
Sbjct: 307 SQLFNWSCQNISSYQRLVSFAHLYSYTSV 335


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 523 SNFDYCG-ISSKIFKRTPLDGPFFRIEGLLVARRSFQFHRDRWASG 389
           ++F +C  I S + KRT + G  + +   +V R+ + F  D W+ G
Sbjct: 522 TDFGFCAQIDSNMTKRTTMVGTPYWMAPEVVTRKEYGFKVDVWSLG 567


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 517 NSTIINWNCKFVHYYDCIYLYFYMYT 594
           ++  + WNC F  + D +Y   Y YT
Sbjct: 460 SNAYLGWNCTFSFFSDIMYGVLYAYT 485


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 357 VMGTGTAKHAHLGPEY 310
           + G GTA+H H GP Y
Sbjct: 442 MFGIGTARHWHWGPTY 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,066
Number of Sequences: 5004
Number of extensions: 46078
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)