Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2111
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199...    30   1.6  
11_06_0695 - 26340161-26340804,26342057-26343429,26344074-263441...    29   3.8  
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403           29   5.0  
07_03_0770 - 21375099-21375122,21375321-21375448,21375541-213756...    28   8.7  

>01_06_1473 - 37619415-37619561,37619649-37619723,37619800-37619919,
            37620074-37620127,37620204-37620426,37620506-37620585,
            37620675-37620764,37620847-37620960,37621192-37621272,
            37621383-37621490,37621677-37621722,37621802-37621899,
            37621975-37622148,37622456-37622548,37623229-37623285,
            37623399-37623438,37623567-37623685,37624179-37624298,
            37624723-37624815,37624940-37625251,37625325-37625444,
            37625545-37625658,37625731-37625910,37625996-37626110,
            37626195-37626358,37626584-37626769,37626888-37626978,
            37627089-37627153,37627223-37627297,37627410-37627493,
            37627575-37627742,37628160-37629293
          Length = 1579

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 337  GRTRTHNTGEDRGS--WLNLRSPTCPGETEKTSGPPVILQS*KKGRLMGYA*IFY 495
            G     N G D     W  +R P CP +T+++   P +L +  K +   +  ++Y
Sbjct: 1407 GNVSNPNEGNDASINFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLYY 1461


>11_06_0695 -
           26340161-26340804,26342057-26343429,26344074-26344173,
           26345230-26345362,26346857-26347258
          Length = 883

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -1

Query: 456 LGLKDY-WWPGGLF--SFTGTGGR-AEVQPGSSIFPCVMGTGTAKHAHL 322
           LG+  Y WW   L   S TG G R     PG++ FP V+GT  + +A L
Sbjct: 80  LGVAGYEWWSEALHGVSDTGPGVRFGGAFPGATAFPQVIGTAASFNATL 128


>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
          Length = 425

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 426 LRATSNPSILKKGPSNGV 479
           LRATS+P I KKGP+ G+
Sbjct: 262 LRATSDPEIYKKGPAFGM 279


>07_03_0770 -
           21375099-21375122,21375321-21375448,21375541-21375672,
           21377016-21377874
          Length = 380

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 453 GLKDYWWPGGLFSFTGTGGR 394
           GL D WW G LF   G G R
Sbjct: 222 GLVDQWWKGFLFPRNGEGAR 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943,305
Number of Sequences: 37544
Number of extensions: 272074
Number of successful extensions: 460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)