Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2111
         (729 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121701-1|AAM52028.1|  525|Drosophila melanogaster RH01675p pro...    30   3.7  
AY094945-1|AAM11298.1|  525|Drosophila melanogaster RH58543p pro...    30   3.7  
AE014298-999|AAN09195.1|  525|Drosophila melanogaster CG4607-PB,...    30   3.7  
AE014298-998|AAF46239.1|  525|Drosophila melanogaster CG4607-PA,...    30   3.7  

>AY121701-1|AAM52028.1|  525|Drosophila melanogaster RH01675p
           protein.
          Length = 525

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -1

Query: 468 TALFL-GLKDYWW--PGGLFSFTGTGGRAEVQPGSSIFPCVMGT 346
           T LF+ G+ + W   P G+FS TG G    +  G + FP  +GT
Sbjct: 351 TTLFMSGIFEKWGRKPSGIFSATGMGACMLLLAGGNWFPDTLGT 394


>AY094945-1|AAM11298.1|  525|Drosophila melanogaster RH58543p
           protein.
          Length = 525

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -1

Query: 468 TALFL-GLKDYWW--PGGLFSFTGTGGRAEVQPGSSIFPCVMGT 346
           T LF+ G+ + W   P G+FS TG G    +  G + FP  +GT
Sbjct: 351 TTLFMSGIFEKWGRKPSGIFSATGMGACMLLLAGGNWFPDTLGT 394


>AE014298-999|AAN09195.1|  525|Drosophila melanogaster CG4607-PB,
           isoform B protein.
          Length = 525

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -1

Query: 468 TALFL-GLKDYWW--PGGLFSFTGTGGRAEVQPGSSIFPCVMGT 346
           T LF+ G+ + W   P G+FS TG G    +  G + FP  +GT
Sbjct: 351 TTLFMSGIFEKWGRKPSGIFSATGMGACMLLLAGGNWFPDTLGT 394


>AE014298-998|AAF46239.1|  525|Drosophila melanogaster CG4607-PA,
           isoform A protein.
          Length = 525

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -1

Query: 468 TALFL-GLKDYWW--PGGLFSFTGTGGRAEVQPGSSIFPCVMGT 346
           T LF+ G+ + W   P G+FS TG G    +  G + FP  +GT
Sbjct: 351 TTLFMSGIFEKWGRKPSGIFSATGMGACMLLLAGGNWFPDTLGT 394


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,212,244
Number of Sequences: 53049
Number of extensions: 489955
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)