Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2111
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-9|CAB02123.3|  327|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z93778-3|CAB07846.1|  446|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z79757-9|CAB02123.3|  327|Caenorhabditis elegans Hypothetical
           protein F55B12.2 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = +1

Query: 529 INWNCKFVHYYDCIYLYFYMYTYTSIITNFAKTTL*RILTKTNNI*SILNLATDVKNKSM 708
           I WNC F   +   +L    + Y S   + A T L  IL  TN +     L T + N+SM
Sbjct: 209 ITWNCNFQETFSQYHLIKIGFDYQS--RHAAITQLTDIL-YTNRVSD--TLITKISNESM 263

Query: 709 TVNSIH 726
           T  ++H
Sbjct: 264 TGETLH 269


>Z93778-3|CAB07846.1|  446|Caenorhabditis elegans Hypothetical
           protein C31H5.6 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = -1

Query: 414 FTGTGGRAEVQPGSSIFPCVM---GTGTAKHAHLG 319
           + G  G     PG   FPCVM   GTG   H H G
Sbjct: 150 YDGFCGTLFKPPGDGPFPCVMDISGTGGGLHEHKG 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,104,594
Number of Sequences: 27780
Number of extensions: 254196
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)