Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2111
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.8  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 598 YKYTYRSISIYNHNSVQTYNSN 533
           YKY Y + +  N+N    YN+N
Sbjct: 329 YKYNYNNNNYNNNNYNNNYNNN 350


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 592 YTYRSISIYNHNSVQTYNSN 533
           Y Y + + YN+N    YN+N
Sbjct: 89  YKYSNYNNYNNNYNNNYNNN 108


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 592 YTYRSISIYNHNSVQTYNSN 533
           Y Y + + YN+N    YN+N
Sbjct: 89  YKYSNYNNYNNNYNNNYNNN 108


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 383 SQDPLSSPVLW 351
           S+DPL  PV+W
Sbjct: 466 SKDPLDPPVIW 476


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 670 ILNLATDVKNKSMTVNS 720
           ILNL TD+ + S +++S
Sbjct: 364 ILNLRTDISSSSSSISS 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,147
Number of Sequences: 438
Number of extensions: 3284
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)