Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2104
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    35   0.014
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.2  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    27   3.8  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    27   3.8  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    26   6.6  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    26   6.6  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    25   8.8  

>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +2

Query: 482 RSSSEHDVITDIVNTRHPKDLVTSARKFFRDLFPVAYQNALRLDSKQFTPEYEACLKDAY 661
           R+SS+ D++ D ++T   K       K   DL    Y+N LR  +++  PE+   ++ +Y
Sbjct: 302 RASSKFDIVEDDMDTNPSKRFSNPHTKHIMDLVRTQYRNVLR--TRELIPEFLEKIRSSY 359

Query: 662 DAVQPF 679
              Q F
Sbjct: 360 SNNQNF 365


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 359 LGLSHRSQNKTAVLFTQLYRGHATRT 436
           LGL +RS   +  LFT  +R HAT T
Sbjct: 26  LGLRYRSDASSLHLFTPTWRDHATNT 51


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
 Frame = +2

Query: 356  LLGLSHRSQNKTAVLFTQLYRGHATRTHTPLATLYDDIRTLLRSSSEHDVITDIVNTRHP 535
            L  LSHR       +  Q+ + +    H  L T Y+D   +L+     +V+    N+R  
Sbjct: 3009 LSALSHRESIHARAILIQIAKTYPQSLHFQLRTAYEDF-LMLKKQQAANVLRG--NSRLR 3065

Query: 536  KDLVTSARKFFRDLFPV-AYQNALRLDSKQFTP-EYEACLKDAYDAVQPFGEV 688
            ++  +S  K  +DL P  ++ +  + +SK  +P   ++  K     V+P  E+
Sbjct: 3066 ENDSSSDNK-SKDLSPSGSFSSVSQFNSKNGSPSSIDSSEKHQISTVKPAWEL 3117


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
 Frame = -2

Query: 514 VGYDVMLGTRS*ESSY-VVIEG------RQRSVS--PRRVPAVQLREEYRCFVL 380
           VG    +G R  E S+ V+ EG      +Q ++   PRR  A QLR+EYR + L
Sbjct: 8   VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKL 61


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 473 TLLRSSSEHDVITDIVNTRHPKDLVTSARKFFRDLFPVAYQNALRLDSKQFTPEYEACLK 652
           TLLR+++++     I++   P D  T   KF  D      +N   L +   T  Y+A + 
Sbjct: 126 TLLRAAAKNHARVTILSD--PADYATFTDKFLSDKLTQDDRNTYALKAFASTASYDAAIT 183

Query: 653 DAY 661
           D +
Sbjct: 184 DYF 186


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 542 LVTSARKFFRDLFPVAYQNALRLDSKQFTPEY 637
           LVTS  ++FR ++P   +N  R + +  +P +
Sbjct: 232 LVTSMLEYFRSVYPQMSKNMKRFEFRLLSPAF 263


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 253 PQSSITPNSRREHCDIHRKDC*TNALHQADVARASLGTIASISKQNSGTLHAI 411
           P   I    +RE  D+ RK C   A H ++  +  L  + +I+K +S + + I
Sbjct: 717 PGKPIPEVYKREDVDLVRKGCANLAKHISNARKYGLPVVVAINKFSSDSPNEI 769


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 461 DDIRT-LLRSSSEHDVITDIVNTRHPKDLVTSARKFFRDLFPVAYQNALRLDSKQFT 628
           D++R+  +R  ++      +++T   K  V      ++DLF    +NA R   K  T
Sbjct: 316 DEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLT 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,174
Number of Sequences: 5004
Number of extensions: 51021
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)