Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2104
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215...    35   0.060
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    29   3.0  
11_01_0541 + 4275660-4275766,4275856-4275973,4276160-4276386,427...    29   5.2  
01_01_0678 - 5209468-5209534,5209588-5209755,5212135-5212292           28   6.9  
12_02_1005 + 25235757-25235915,25236258-25236374,25236467-252365...    28   9.2  
01_06_1546 + 38147846-38147853,38148413-38148986,38149160-38150011     28   9.2  

>12_02_0803 +
           23318429-23318552,23318688-23319877,23320724-23321528,
           23321938-23322417,23322535-23322815,23323207-23323302,
           23323423-23323548,23324100-23325890
          Length = 1630

 Score = 35.1 bits (77), Expect = 0.060
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +1

Query: 256 QSSITPNSRREHCDIHRKDC*TN-ALHQADVARAS--LGTIASISKQNSGTLHAIVPRAR 426
           +S++ P  RREH +   +DC  N A+H          +G I S+S   S   H ++P   
Sbjct: 300 KSNVQPCERREHIENGIRDCNVNEAVHTVTTEPGGHHIGAIKSLSL--SKMQHTVIP--- 354

Query: 427 DEDSHSSGDPL*RHTNSPT 483
           D D+H +G    +H   PT
Sbjct: 355 DADNHVTGKQHVKHAAPPT 373


>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 205 RSNMRWSVLWSRAGSKPQSSITPNSRREHC 294
           R  MRW ++W++   +    ITPN ++  C
Sbjct: 667 RLRMRWLMVWNKIAKRLNGQITPNLKKIIC 696


>11_01_0541 +
           4275660-4275766,4275856-4275973,4276160-4276386,
           4276505-4276729,4276902-4277052,4277139-4277345,
           4277442-4277520,4277605-4277723
          Length = 410

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 375 RCDSPKRCSCNVRLVESISSAVLTVDIAMLSSA 277
           RC S K+C   ++ V+S S  VL +D   LS++
Sbjct: 108 RCGSQKQCDYVIQYVDSSSMGVLVIDRFSLSAS 140


>01_01_0678 - 5209468-5209534,5209588-5209755,5212135-5212292
          Length = 130

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 455 LYDDIRTLLRSSSEHDVITDIVNTRHPKDLVTS 553
           +YDDI  +L  ++ HD    +VN  HP   V S
Sbjct: 59  VYDDINIVLHMTAVHDEEESLVNLVHPFSCVFS 91


>12_02_1005 +
           25235757-25235915,25236258-25236374,25236467-25236535,
           25237509-25237964
          Length = 266

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +1

Query: 424 RDEDSHSSGDPL*RHTNSPTIEFRA*RHNR----HRQHEAS*RFG-HQRKEVLQRSIPGC 588
           +DE S  SG+   +   + +   +A RH      H   E   RF   +R   LQR +PGC
Sbjct: 53  KDEASDDSGERKKKKKKASSAAGKASRHRHAAGAHNLTEKRRRFKITERFRTLQRLVPGC 112

Query: 589 VSKRTQ 606
            +K  Q
Sbjct: 113 DNKSNQ 118


>01_06_1546 + 38147846-38147853,38148413-38148986,38149160-38150011
          Length = 477

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 366 YRIDLKTKQRYSSRNCTAGTRRGLTLLWRPSMTTYELSYDRV 491
           YR+D+     YSS++  + T  G+ L   P+  T++L   +V
Sbjct: 193 YRVDIIGVSCYSSKDLWSWTNEGIVLPGEPTNFTHDLHKSKV 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,586,848
Number of Sequences: 37544
Number of extensions: 367737
Number of successful extensions: 973
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)