Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2104
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (gr...    30   2.0  
AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z81558-5|CAB04542.2|  543|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81459-2|CAB03828.2|  543|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL032643-2|CAA21661.2|  404|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (grd
           related) protein12 protein.
          Length = 186

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 319 FSSPYGGYRNALFGCSA*CCSEVCFPPSTTALTT 218
           FS+P   + N+LFG S   CS  C PP +T  TT
Sbjct: 12  FSAPASAFFNSLFGGSNCGCS--CTPPPSTCPTT 43


>AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical
           protein Y116A8A.6 protein.
          Length = 456

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
 Frame = +2

Query: 254 LRAALRRTAEESIAISTVRTAELMLSTRRTLQEHLLGLSHRSQNKTAVLFTQLYRGHATR 433
           L+A+ +   E  +   + RTA    S++  +Q  +         +T+ L T       T 
Sbjct: 337 LQASSKPATEPLLQPESARTASSSASSKPEVQTTIPTEIQTPSLRTSSLKTSTTVTTTTV 396

Query: 434 THT---PLATLYDDIRTLLRSSSEHDVITDIVNTRHPKDLVTSARKFFRDLF 580
           T T   P    Y D   ++    E D IT+  N  H  DL+    +FF   F
Sbjct: 397 TTTTPDPATVDYGDDHDMIGLVDEDDEITESNNRAHRMDLILGQFEFFLSSF 448


>Z81558-5|CAB04542.2|  543|Caenorhabditis elegans Hypothetical
           protein F59D12.4 protein.
          Length = 543

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 548 TSARKFFRDLFPVAYQNALRLDSKQFTPEYEACLKDAYDAVQPFGEVPQQLGVSLSQSL 724
           T    FF +LF V +  A    S   T +   C++  Y  ++ F ++PQ++   LS  L
Sbjct: 136 TIVELFFDELFQVMFSIANPFYS--ITNDQRVCMESFYREIEAFDDIPQKIVNQLSLPL 192


>Z81459-2|CAB03828.2|  543|Caenorhabditis elegans Hypothetical
           protein F59D12.4 protein.
          Length = 543

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 548 TSARKFFRDLFPVAYQNALRLDSKQFTPEYEACLKDAYDAVQPFGEVPQQLGVSLSQSL 724
           T    FF +LF V +  A    S   T +   C++  Y  ++ F ++PQ++   LS  L
Sbjct: 136 TIVELFFDELFQVMFSIANPFYS--ITNDQRVCMESFYREIEAFDDIPQKIVNQLSLPL 192


>AL032643-2|CAA21661.2|  404|Caenorhabditis elegans Hypothetical
           protein Y54E5A.3 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 356 DALATSAWWRALVQQSLRWISQCSLRLFGVMLL*GLLPALDHSTDHRIFDLVLGRHQ 186
           D   TSA WR  +++  ++       L G +   G L  LD ST H   DL+L + +
Sbjct: 286 DMRTTSAKWRIDLRKPKKYDKNRPCLLQGTVQRGGELLILDFSTWHMKIDLILAKER 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,203,394
Number of Sequences: 27780
Number of extensions: 294273
Number of successful extensions: 786
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)