Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2102
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          25   0.89 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.3  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 497 DPANGSNSFVGFVFIHTGSVNPSLISGSLEAIFIT 393
           DP   S++++GF+F+    V    I  S  AI +T
Sbjct: 57  DPVTNSDTYIGFLFVLGLIVPVFTIVSSYAAIVLT 91


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 195 YLFNNYVFCCLLNYVINLYFYLRQS 269
           YL   Y+ CC+L  V  + F+L QS
Sbjct: 244 YLIQIYIPCCMLVIVSWVSFWLDQS 268


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 195 YLFNNYVFCCLLNYVINLYFYLRQS 269
           YL   Y+ CC+L  V  + F+L QS
Sbjct: 244 YLIQIYIPCCMLVIVSWVSFWLDQS 268


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 189 ILYLFNNYVFCCLLNYVINLYFYL 260
           + Y+FN  + C L+N V  L FY+
Sbjct: 214 MFYVFNLILPCILINSVALLVFYV 237


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 LFNNYVFCCLLNYVINLYFYLRQSYHF 278
           ++N Y++  ++  V+  YF++  S HF
Sbjct: 437 VYNGYIYQKMVADVVGDYFFICPSIHF 463


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 LFNNYVFCCLLNYVINLYFYLRQSYHF 278
           ++N Y++  ++  V+  YF++  S HF
Sbjct: 437 VYNGYIYQKMVADVVGDYFFICPSIHF 463


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 430  DGFTLPVWMKTKPTKEFEPFAGSPPPP 510
            +G  +P +M+  P   F PF    PPP
Sbjct: 1142 NGIKMPSFMEGMPHLPFTPFNFWNPPP 1168


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 343 FNKYNKQTTRQFNTKWYY 290
           +N YN      +N K YY
Sbjct: 330 YNNYNNNNYNNYNKKLYY 347


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 330 TSKLPDNSILNGIIILSRNDKIASN 256
           ++K   N +LN +  +++NDK   N
Sbjct: 70  SAKRDINDVLNVLYFINKNDKYEEN 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,163
Number of Sequences: 438
Number of extensions: 3837
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)