Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2099
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    37   0.004
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    29   0.56 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   3.0  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    26   5.2  

>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +3

Query: 24  KKIDIAKKQSS--RNVYQCHVIGPRSCGKTSICRSFL 128
           K++   +K S   RNV+ C V+G +SCGKT++  SF+
Sbjct: 406 KRVSQNRKVSKYDRNVFLCFVVGSKSCGKTALLSSFI 442


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 39  AKKQSSRNVYQCHVIGPRSCGKTSICR 119
           A  +SS     C +IGPRSCGKTS+ +
Sbjct: 99  ANDESSYGPCVC-LIGPRSCGKTSVLK 124


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = -3

Query: 468 SFIYLYYLGGINDKTNYKFNICYFMAHS*LSW----HFLPLFLYCFSSILNLFYFV 313
           SF+Y+Y +    + T+  F I   +AH  LSW     F   FL+  + +L++F  V
Sbjct: 687 SFLYMYQILTSENWTDVMFAIQARLAHLHLSWIPGAFFTLWFLFSNNVVLSMFIAV 742


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 378 SWHFLPLFLYCFSSILNLFY 319
           SWHF  L  +CF  I    Y
Sbjct: 366 SWHFFELLFFCFLGIFGGLY 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,008
Number of Sequences: 5004
Number of extensions: 63833
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)