Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2099
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1314 + 36215607-36215734,36215911-36216043,36216135-362162...    57   1e-08
03_06_0407 - 33714563-33714636,33714966-33715152,33715943-337160...    55   7e-08
08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882           28   7.2  
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665...    28   9.5  

>01_06_1314 +
           36215607-36215734,36215911-36216043,36216135-36216281,
           36217172-36217348,36217469-36217717,36217917-36217964,
           36218364-36218419,36218639-36218720,36219260-36219515,
           36219563-36219629,36219688-36219724,36219918-36220030,
           36220838-36220988,36221352-36221538,36221768-36221841
          Length = 634

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 23/47 (48%), Positives = 34/47 (72%)
 Frame = +3

Query: 6   FPVTREKKIDIAKKQSSRNVYQCHVIGPRSCGKTSICRSFLGIGHKV 146
           F  TR++++D  KKQ+ RNV+QC+V GPR  GKT++ +SFL   H +
Sbjct: 369 FTTTRKRRVDRKKKQTQRNVFQCYVFGPRHAGKTALLQSFLKRYHSI 415


>03_06_0407 -
           33714563-33714636,33714966-33715152,33715943-33716093,
           33716520-33716632,33717022-33717085,33717180-33717391,
           33717540-33717621,33717811-33717866,33718004-33718072,
           33718524-33718772,33718873-33719049,33719556-33719702,
           33719794-33719926,33720093-33720307
          Length = 642

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 21/42 (50%), Positives = 32/42 (76%)
 Frame = +3

Query: 6   FPVTREKKIDIAKKQSSRNVYQCHVIGPRSCGKTSICRSFLG 131
           F   R++++D  K+Q+ RNV+QC+V GPR  GKT++ +SFLG
Sbjct: 405 FTTMRKRRVDRKKQQTQRNVFQCYVFGPRGAGKTALLQSFLG 446


>08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882
          Length = 785

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -2

Query: 364 TIVFV--LFFVNIEPILFRGTQ*RCYFIAFFSNGHVCLCTV 248
           TIVF+  LFF+++ PIL  G+      +   ++G VCL ++
Sbjct: 744 TIVFIFPLFFLDVVPILVSGSLCVAEMVDKLTSGPVCLASL 784


>11_04_0071 -
           13165019-13165082,13165345-13165428,13166325-13166524,
           13166756-13170655
          Length = 1415

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -1

Query: 746 YNGTSVKTTLDLYISIEYRYRYVLTIYSQTWVSENWISEKTL*VRVIARTRH 591
           +N + +  +   ++SI  RY Y   +YSQ + S++    K   V    +TR+
Sbjct: 541 FNSSGIAQSTIQHLSINTRYAYKWDVYSQKFYSKDDFQRKLTYVGETVQTRN 592


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,989,544
Number of Sequences: 37544
Number of extensions: 339723
Number of successful extensions: 634
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)