Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2098
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AC026301-11|AAK68891.2|  273|Caenorhabditis elegans Hypothetical...    28   8.2  

>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -2

Query: 231 AFVRFSLCIADCSTFTSRNINISSCR---AIKTSHFHIRIVLSVISFVIVRAIFIVIPHT 61
           A V F+     CS  T   I + S R   + KT  +HI++ +  +   +++A+F+V+P T
Sbjct: 598 ATVFFACIFVVCSLATI--IVVQSARDTMSYKTVKYHIQVTVLFLCSCVIQALFVVLPVT 655

Query: 60  LI 55
            I
Sbjct: 656 HI 657


>AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical
           protein Y26D4A.2 protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 172 NISGGEGGAVGDAQAKSNEGAIRTVRMINGKTFVLYKDYTYSYKGKM 312
           N SGGEG             ++    ++NGK + LY + T  Y  K+
Sbjct: 89  NASGGEGQVAFKVYTDQPSCSLNAQLLLNGKRYPLYPNDTLDYLWKI 135


>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
           protein R10E8.6 protein.
          Length = 1696

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 561 LLNY*YKLVNYPHITIYRKLRITYNSFNGSLFVSDVYAVGGD 436
           LL+  YKL ++      R+  I+Y  F+    +SD+Y +G D
Sbjct: 263 LLSKKYKLQHFLESPNAREFLISYRKFDEQPMISDIYEMGLD 304


>AC026301-11|AAK68891.2|  273|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.12 protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 349 PCCIASDSCSCRPSFLCNCTCSPCTEQKFF 260
           PC +   +C     F  NCTC   ++ KFF
Sbjct: 29  PCNVDDSTCMPLEDFDQNCTCILLSDDKFF 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,880,985
Number of Sequences: 27780
Number of extensions: 312413
Number of successful extensions: 925
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)