Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2096
         (482 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54DY2 Cluster: Putative uncharacterized protein; n=1; ...    33   3.4  
UniRef50_Q9NGJ7 Cluster: Clc-like protein 5; n=2; Caenorhabditis...    32   7.8  

>UniRef50_Q54DY2 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 908

 Score = 33.1 bits (72), Expect = 3.4
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 185 FHITSAIRVNSAVDSSTGVDRKVLVNSNNNVIQFTFNFI 69
           FH+TS+  VN+  D S     ++++NSN  +I F FN I
Sbjct: 335 FHLTSSTSVNNTKDIS-----RLIINSNLEIINFNFNLI 368


>UniRef50_Q9NGJ7 Cluster: Clc-like protein 5; n=2;
           Caenorhabditis|Rep: Clc-like protein 5 - Caenorhabditis
           elegans
          Length = 281

 Score = 31.9 bits (69), Expect = 7.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 126 IDTCRRVNSTINTYCASDVKCWNEFVD*LLHYY 224
           +D  R V S +  YC    +CW  F D L++YY
Sbjct: 41  LDADRYVQSGLWLYCPGQAQCWYIFSDSLINYY 73


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 376,450,280
Number of Sequences: 1657284
Number of extensions: 6049183
Number of successful extensions: 12843
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12842
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)