Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2096
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.04c |||mitochondrial copper ion transport protein|Schiz...    27   2.0  
SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.4  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   6.0  

>SPCC1672.04c |||mitochondrial copper ion transport
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 101

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 280 KSNQKKLVIIGTKFLIARCERGLDGKNSYEKLSRH 384
           + NQ++  ++  K+L  R + GL GK+  + L  H
Sbjct: 35  RENQEECRLLAKKYLQCRMDTGLFGKDDMKNLGFH 69


>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 76  LNVNCITLLFELTKTFRSTPVDESTALLTRIALVM*N 186
           + + CI L+F + +   ST +D ++  L   +L+M N
Sbjct: 11  VQILCIALMFSIFRVCISTAIDFTSPKLDEFSLIMEN 47


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = -3

Query: 339 FTTRDKELRSNYN*FFLV*FRTMTYKITLHLTHLTVQYNNNVIINRQIHSNI 184
           F +   E  S+Y  F  +   +    IT++L+HLTV++ +  I+ R ++S++
Sbjct: 775 FLSLRSEYFSSYFQFVSMESNSFDIPITVNLSHLTVEHMS--IVLRHVYSDL 824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,046
Number of Sequences: 5004
Number of extensions: 27281
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)