Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2096
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23526-2|AAK95867.1|  281|Caenorhabditis elegans Claudin-like in...    32   0.25 
AF252605-1|AAF67351.1|  281|Caenorhabditis elegans Gas3/PMP22-li...    32   0.25 
AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a prot...    27   9.4  

>U23526-2|AAK95867.1|  281|Caenorhabditis elegans Claudin-like in
           caenorhabditisprotein 5 protein.
          Length = 281

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 126 IDTCRRVNSTINTYCASDVKCWNEFVD*LLHYY 224
           +D  R V S +  YC    +CW  F D L++YY
Sbjct: 41  LDADRYVQSGLWLYCPGQAQCWYIFSDSLINYY 73


>AF252605-1|AAF67351.1|  281|Caenorhabditis elegans Gas3/PMP22-like
           protein protein.
          Length = 281

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 126 IDTCRRVNSTINTYCASDVKCWNEFVD*LLHYY 224
           +D  R V S +  YC    +CW  F D L++YY
Sbjct: 41  LDADRYVQSGLWLYCPGQAQCWYIFSDSLINYY 73


>AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a protein
           protein 37 protein.
          Length = 302

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 279 RTMTYKITLHLTHLTVQYNNN 217
           RT   KI  H THLTVQ  +N
Sbjct: 39  RTAVDKIETHSTHLTVQLRSN 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,999,789
Number of Sequences: 27780
Number of extensions: 155320
Number of successful extensions: 297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)