Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2095
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    26   5.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   7.1  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   7.1  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   9.4  

>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 292 MRHPP*DISSKVSSIVTTAAPPFKPKRITASRQNRQSDDTYSCGLTRGP 146
           M H P       S+ V+T+A  + P  +T +++ +  DD       R P
Sbjct: 66  MSHSPGSCMDSESAAVSTSAKCYIPPVLTPAKEPKLGDDVSGIDYIRSP 114


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 615  FAKFGPIAGVYIRGSLRQ-NLPTYFRWT-RSFSVVPCHEYVIISLEKFVPA*NWNT 776
            FA       V++ G     N   +F W  +  SV  CH Y+I   ++FV    WNT
Sbjct: 1162 FACCYQFGAVFVNGEGSMVNKECWFDWIGKPNSVTSCHGYLIAFNDEFVEI--WNT 1215


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 555 LDQWVRDFILQFKIDTMKFDC*FRIIIKFALEVMLR*FLLTV-SYF 421
           L++W+++ + ++ ID ++FD      I+F L +     + T+  YF
Sbjct: 214 LEKWIKNVVQEYDIDGIRFDAIKHAPIEFWLRMSKAADIFTIGEYF 259


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 576 LRCDCYIIMNFYFFAKFGPIAGVYIRGSL 662
           LR D   +MN+ FF  F    GVY  G +
Sbjct: 226 LRIDAVKMMNYTFFPDFVDATGVYSVGEV 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,855
Number of Sequences: 5004
Number of extensions: 65079
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)