Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2095
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288...    29   5.6  
05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    29   5.6  
01_06_1749 - 39636951-39638102                                         29   5.6  
01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206           29   5.6  
02_03_0016 + 13962086-13962326,13962529-13962614,13962652-139627...    28   9.8  

>08_02_1267 +
           25728324-25728407,25728436-25728502,25728753-25728828,
           25729388-25729450,25729640-25729896,25731299-25731440,
           25731524-25732017,25732398-25732536,25733805-25733876,
           25733960-25734040,25734677-25734843,25734942-25735147,
           25735301-25735427,25735515-25735639
          Length = 699

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 725 LMAWHDRKRSGPSKISR*ILPKGSSDINPCNRSKFC 618
           ++A+H  + S  +KI+R  LP+GS+ + P +    C
Sbjct: 12  ILAFHSHQFSQETKITRGSLPQGSTIVPPSHSRSIC 47


>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 239 RCNYTRDLRTYISRWVAHLRCRCL 310
           RC  T  LR    RW  HL+C CL
Sbjct: 301 RCTGTTVLRNKAPRWHEHLQCWCL 324


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 256 SSIVTTAAPPFKPKRITA 203
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206
          Length = 584

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 149 SLPPVITQIKKCGPLHYFEFEL*LKFSSR--FSNLLKACIICMYLIKS 12
           S+PP+      CGP ++F  +    F+    + +LLK  +IC  ++ S
Sbjct: 199 SIPPLPLPPHLCGPTYFFHIDTAFSFAGTIFWVDLLKGILICDDILSS 246


>02_03_0016 +
           13962086-13962326,13962529-13962614,13962652-13962750,
           13963022-13963131,13964024-13964083,13964220-13964304
          Length = 226

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 703 NDLVHLK*VGRFCRRDPLI*TPAIGPNFA 617
           +DL H++   R  R DP++  PA GPN +
Sbjct: 9   SDLPHVRCYTRHLRLDPMLFMPANGPNLS 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,281,650
Number of Sequences: 37544
Number of extensions: 406953
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)