Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2095
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like ...    31   0.72 
AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like
           protease protein 2 protein.
          Length = 893

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 615 FAKFGPIAGVYIRGSLRQNLPTYFRWTRSFSVVPCHEYVIISLEK 749
           F+K  PI   +I+  ++ N P   RWTR F V+   +Y+II + +
Sbjct: 599 FSKRRPIEPEHIK-IVKDNCPRVLRWTRKFDVL-AKDYIIIPINE 641


>AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.12 protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 183 LCLFCREAVMRFGLKGGAAVVTILETLELISQG 281
           +C   R AV++FG+     +V I+ET+  +S G
Sbjct: 131 VCSSLRTAVVKFGMHFDKVMVAIIETMVFLSLG 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,813,947
Number of Sequences: 27780
Number of extensions: 373115
Number of successful extensions: 739
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)