Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2092
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   1.0  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   7.1  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/72 (26%), Positives = 37/72 (51%)
 Frame = +1

Query: 559  SCLKHTKIIIKTYFIGFQESRCPKIIIYIYLNSLWSPHPKNRAPFFGRNLLIMTLIINTS 738
            S   H+  ++ TY +GF  S    II  I L   ++ + K +  +  +  LI++ ++N +
Sbjct: 1677 SSTTHSLKLLSTYMVGFSTSIIQYIIHLILLEFDFNGNNKKQKEYVTQ--LILSGLLNKN 1734

Query: 739  LKYVIKTYLDIL 774
               + KT ++IL
Sbjct: 1735 TNSIRKTCMNIL 1746


>SPCC1322.12c |bub1||serine/threonine protein kinase
            Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 70   IVYSMNFHK-IQSNVYLISNSEHRILIQPRPKLI*NCNLWH 189
            I+Y+M F + I++ + +I+    ++L Q R K   N +LWH
Sbjct: 948  IIYTMLFGQYIETRIEVINGQRRQVLTQ-RMKRYWNQDLWH 987


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,131
Number of Sequences: 5004
Number of extensions: 69506
Number of successful extensions: 124
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)