Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2089
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 192 2e-49
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 183 6e-47
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 30 0.95
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 2.9
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 28 5.0
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 5.0
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 28 5.0
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 28 5.0
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 28 5.0
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 28 5.0
AF039710-9|AAB96685.2| 172|Caenorhabditis elegans Hypothetical ... 27 6.7
AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 192 bits (467), Expect = 2e-49
Identities = 93/154 (60%), Positives = 115/154 (74%), Gaps = 2/154 (1%)
Frame = +3
Query: 54 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMFTSKTGKHGHAKVHLVGID 233
+D HF TGDSGA+ATFP QCSALRKN VM+KGRPCKIVEM TSKTGKHGHAKVH+V ID
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
Query: 234 IFNGKKYEDICXSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 410
IF KK EDIC STHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK+PD +LG
Sbjct: 67 IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELG 125
Query: 411 TQLRTDFDSGK-ELLCTVLKYCGEECVIAVKANT 509
Q+R ++ + +L V+ GEE ++ K +T
Sbjct: 126 QQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 183 bits (446), Expect = 6e-47
Identities = 87/154 (56%), Positives = 115/154 (74%), Gaps = 2/154 (1%)
Frame = +3
Query: 54 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMFTSKTGKHGHAKVHLVGID 233
++ F++ +SGA+ATFP QCSALRKN VM++GRPCKIVEM TSKTGKHGHAKVH+V ID
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100
Query: 234 IFNGKKYEDICXSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 410
IF KK EDIC STHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK+P+GDLG
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLG 159
Query: 411 TQLRTDFDSGK-ELLCTVLKYCGEECVIAVKANT 509
+R + + +L V+ CGEE ++ K +T
Sbjct: 160 NTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 30.3 bits (65), Expect = 0.95
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +3
Query: 279 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 449
N +P +K++ Y L ++ GY+ + GDL+ KI D LR D ++ G+
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629
Query: 450 LCTVLKYCGEEC 485
++K CG++C
Sbjct: 630 HAALVKECGDKC 641
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +3
Query: 234 IFNGKKYEDICXSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 389
IF + ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 74 IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 49 TSKTHTLRPETPGPQPPSPCNVRP 120
T K T R E+P P PP P RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 339 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 455
GYL GD ++++K+ +G Q+ +D D K C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 136 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 44
+P +R+++C G + E E ++KC +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +1
Query: 19 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 126
V+K T + ++S T T TPGP P +PC+ P V
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 189
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +1
Query: 19 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 126
V+K T + ++S T T TPGP P +PC+ P V
Sbjct: 13 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 53
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +1
Query: 19 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 126
V+K T + ++S T T TPGP P +PC+ P V
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 207
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +1
Query: 19 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCV 126
V+K T + ++S T T TPGP P +PC+ P V
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDV 189
>AF039710-9|AAB96685.2| 172|Caenorhabditis elegans Hypothetical
protein C46E10.8 protein.
Length = 172
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 63 HFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMFTSKTGKHGHAKV 215
H ET DSGA A + A +GF + P ++ +S + + G +V
Sbjct: 86 HLETADSGAHAIPSLGSPAPSSSGFATMIVPPAPLLSAISSGSPQLGDTRV 136
>AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical
protein W07E6.1 protein.
Length = 664
Score = 27.1 bits (57), Expect = 8.8
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +3
Query: 246 KKYEDICXSTHNMDVPHVKREDYQLTDISDDGYLTLM---ADNGDLREDLKIPDGDLGTQ 416
KK + H + P + E QL D +DG L +D+ DLR+D D D G
Sbjct: 45 KKVKKSAKKAHEEE-PIEQVEKLQLIDDDEDGLEGLSFPGSDDEDLRDDYSDDDSDAGDH 103
Query: 417 L 419
L
Sbjct: 104 L 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,445
Number of Sequences: 27780
Number of extensions: 299382
Number of successful extensions: 988
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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