Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2089
(545 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 25 0.50
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 25 0.50
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 23 2.0
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 3.5
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 3.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.7
AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phospha... 21 6.2
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 6.2
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 8.2
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 8.2
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 8.2
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.50
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 130 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 35
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.50
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 130 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 35
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 23.0 bits (47), Expect = 2.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 231 DIFNGKKYEDIC 266
D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 22.2 bits (45), Expect = 3.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 196 FPVLDVNISTILHGR 152
FPVL V I+ +LHG+
Sbjct: 8 FPVLFVIINVLLHGQ 22
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 3.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 49 TSKTHTLRPETPGPQ 93
T H PETPGPQ
Sbjct: 462 TPHHHPHPPETPGPQ 476
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 448 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 350
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 448 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 350
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 448 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 350
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 448 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 350
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 448 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 350
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 448 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 350
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 4.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 448 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 350
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 4.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 448 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 350
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phosphate
dehydrogenase protein.
Length = 363
Score = 21.4 bits (43), Expect = 6.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 231 DIFNGKKYEDICXSTH 278
+I NGKK +I TH
Sbjct: 44 EIINGKKLTEIINETH 59
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.4 bits (43), Expect = 6.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 317 LVVFALHVRYVHVVCG 270
LV FAL +R +VCG
Sbjct: 707 LVTFALVLRPTDIVCG 722
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 8.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +2
Query: 119 PA*KWFRYAEGSS 157
P +W+++ EGSS
Sbjct: 242 PVHRWYKFIEGSS 254
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.0 bits (42), Expect = 8.2
Identities = 12/40 (30%), Positives = 15/40 (37%)
Frame = -2
Query: 457 VHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVRYP 338
+H + N PRSP R S + I V YP
Sbjct: 307 IHRGRGSVHNGSNNGSPRSPESNSRCSVKREKIKISVSYP 346
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.0 bits (42), Expect = 8.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 412 VPRSPSGILRSSRRSPLS 359
VP+S +G+ SSRRS ++
Sbjct: 239 VPKSVAGLNVSSRRSDMN 256
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,309
Number of Sequences: 438
Number of extensions: 3776
Number of successful extensions: 19
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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