Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2088
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   3.5  
Z82062-3|CAB04892.1|  384|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    28   8.1  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   8.1  
AF067609-11|AAC17532.2|  252|Caenorhabditis elegans Hypothetical...    28   8.1  

>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 583 VPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTVEKRS 723
           +P  + + +  P  V   VP P  V   +P  + +P+P P  V  +S
Sbjct: 1   MPPPIPIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQS 47


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 583 VPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPQP 702
           +P  +  H  KP+   +  P P  + K +P+   +P P+P
Sbjct: 217 MPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPKP 256



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 586 PYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPQP 702
           P  +  H  KP+   +  P P  + K +P+   +P P P
Sbjct: 184 PKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMP 222


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 616 PYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTV 711
           P  V   VP P  V+  +P  V VPVP P  V
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPVPVPTPV 180


>Z82062-3|CAB04892.1|  384|Caenorhabditis elegans Hypothetical
           protein W02A11.5 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 729 ELGPFLDSVGLGNGHFH-FIRDFLLNGVGSGHFDFDFVRLVNVDLDFIRYF 580
           E G + D +    G +   +R F  NGV +  FD D ++ V +    +R F
Sbjct: 259 ENGEYTDKLVFNFGEYEEILRTFTKNGVWNIEFDVDIIKTVGLSKKKLRCF 309


>Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical
           protein F53B6.6 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 189 AVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLGKGNHGQRCHQNNR 31
           +++F ++SE+  S  S VI +  +L  LF C+   FL+  + N     H + R
Sbjct: 553 SLSFQSSSEVCLSKTSTVIFSTAILLALFCCVTVKFLVTRQRNRQLLHHASKR 605


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 186 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLG 70
           +  IAT  ++S+I + ++  P+ +F    C RC  +  G
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRCLLMPAG 321


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = -2

Query: 184 SLHRYLRNYVLHKILCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTMPPK*PCTSLWSP 11
           S H     Y   +  C  CP  +    R+P  C +P     P P  PP  PC + + P
Sbjct: 12  SFHFAFAQYPFGRGGCGGCPTPMCQP-RMP--CAAPMPMPMPMPVCPPPPPCPAQFCP 66


>AF067609-11|AAC17532.2|  252|Caenorhabditis elegans Hypothetical
           protein C23H5.1 protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 690 GHFHFIRDFLLNGVGSGHFDFDFVR 616
           GH    ++ L  G G+GH+ FDF+R
Sbjct: 32  GHILVGKEVLDVGCGNGHYSFDFLR 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,416,359
Number of Sequences: 27780
Number of extensions: 280609
Number of successful extensions: 976
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)