Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2087
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical
           protein T06C12.8 protein.
          Length = 669

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 411 NLYFLFFYSNYKGSFVLQKAIVLLSFVFFYIFFIASTGGTS 533
           +L  LF+Y  +K    L   ++LLS +FFY FF  +T  T+
Sbjct: 67  SLITLFYYRRFKRLLPLYLLVILLSLLFFYNFFPITTTETN 107


>Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical
           protein ZK550.2 protein.
          Length = 502

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 420 FLFFYSNYKGSFVLQKAIVLLSFVFFYIFF 509
           FLF +S YK   +LQ   + ++F+   +F+
Sbjct: 447 FLFQHSGYKYVIILQSTTIFIAFILMGVFY 476


>Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical
           protein F17B5.2 protein.
          Length = 919

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 411 NLYFLFFYSNYKGSFVLQKAIVLLSFVFFYIFFIAS 518
           +L  LF+   +K    L   I+L+S +F Y FF A+
Sbjct: 69  SLITLFYSKRFKRILPLYLLIILISMIFLYNFFPAT 104


>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
           protein T20G5.5 protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 127 LQDEHLALPIRPFHSP--KQQFAMDLLGTVVNPIEISTLS 240
           L DE  + PI P  S     Q +MDL+ T +NP EI ++S
Sbjct: 329 LTDETPSDPIHPHSSGLFNGQRSMDLISTEINPSEIVSVS 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,622,348
Number of Sequences: 27780
Number of extensions: 254599
Number of successful extensions: 474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)