Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2086
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904... 53 2e-07
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 30 2.3
08_01_0992 + 10045182-10045917,10046225-10046685 29 3.1
02_03_0188 + 16173801-16173910,16174045-16174402 29 4.0
09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006 29 5.3
12_01_0259 - 1905291-1905393,1905536-1905672,1905787-1905893,190... 28 7.1
11_01_0261 - 1989988-1990090,1990232-1990368,1990483-1990589,199... 28 7.1
09_04_0256 + 16148820-16148998,16149547-16150241,16150317-161505... 28 7.1
10_06_0158 - 11320173-11320279,11320347-11321038,11321283-113215... 28 9.3
05_07_0230 - 28540114-28540323,28540414-28540548,28540779-285409... 28 9.3
04_03_1012 - 21711945-21714002 28 9.3
>01_07_0298 -
42586007-42589742,42590167-42590280,42590295-42590437,
42591174-42591347
Length = 1388
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/41 (58%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Frame = -2
Query: 624 RFNGSRAILSGPAGGVIGYAMTSYQKETGLPVIG-EYGETS 505
RF+G +A+LSGPAGGV+GY+ T +Q ET P+IG + G TS
Sbjct: 413 RFSGHKAVLSGPAGGVVGYSQTLFQLETSKPLIGFDMGGTS 453
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +3
Query: 306 HVCQSHVKYLVFCDSDPPQPHRQQVIERVRVAADMNPGNPQPADRRIGLF 455
HV QSH + PP PHR+ V VAA G+ PA ++ +F
Sbjct: 207 HVPQSHPSDAQCLTAQPPDPHRRNV-----VAAAFAGGSSSPAPLQVPVF 251
>08_01_0992 + 10045182-10045917,10046225-10046685
Length = 398
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 613 LARHPLWASWRRDWLRYDLVPERNWPAGHR*VWG 512
L RH + ASW + R ++ PER A HR + G
Sbjct: 210 LIRHAVPASWWKSMRRLNIGPERRLAAAHRVLHG 243
>02_03_0188 + 16173801-16173910,16174045-16174402
Length = 155
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 622 IQRLARHPLWASWRRDWLRYDLVPERNWP 536
++R ARH W WRR WLR+ E WP
Sbjct: 62 LRRPARHRQW--WRRGWLRH----EEAWP 84
>09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006
Length = 585
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 348 SDPPQPHRQQVIERVRVAADMNP-GNPQPADRRIGLFLMHLWKLNENEPQW 497
S PP P R ERV AD P G+ +P + G L K+ + EP W
Sbjct: 258 SRPPSPPRGGGAERV---ADRPPAGHKRPVEPEAGRKKKRLRKIGQTEPCW 305
>12_01_0259 -
1905291-1905393,1905536-1905672,1905787-1905893,
1906012-1906090,1906256-1906342,1906987-1907265,
1907401-1908114
Length = 501
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 603 ILSGPAGGVIGYAMTSYQKETGLPVIGE 520
+L GPA G +G TGLP+IGE
Sbjct: 27 LLGGPAAGRLGKRARMPPGSTGLPLIGE 54
>11_01_0261 -
1989988-1990090,1990232-1990368,1990483-1990589,
1990708-1990786,1990952-1991038,1991688-1991966,
1992109-1992822
Length = 501
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 603 ILSGPAGGVIGYAMTSYQKETGLPVIGE 520
+L GPA G +G TGLP+IGE
Sbjct: 27 LLGGPAAGRLGKRALMPPGSTGLPLIGE 54
>09_04_0256 +
16148820-16148998,16149547-16150241,16150317-16150573,
16150668-16151349,16151423-16151626,16151715-16152449,
16152533-16152698,16153253-16153400
Length = 1021
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 369 RQQVIERVRV-AADMNPGNPQPADRRIGLFLMHLWKLNENEPQWWRKMFPHT 521
R + I R+R +A P P PA + +W+ EN P WR + HT
Sbjct: 37 RPRQIRRLRARSAASAPARPVPARVEMSDSRDPVWEHGENIPPGWRCKYCHT 88
>10_06_0158 -
11320173-11320279,11320347-11321038,11321283-11321509,
11321521-11321611,11321839-11322125,11322428-11322523
Length = 499
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 445 IRRSAGCGLPGFMSAATLTRSITCCRWGCGGSLSQNTRYLTWD 317
+R+ G G + AAT TR + W GG+ ++T + W+
Sbjct: 37 VRQIHGRGTREVLHAATTTRGVQRRTWTQGGARRRSTEFDRWN 79
>05_07_0230 -
28540114-28540323,28540414-28540548,28540779-28540953,
28541104-28541300,28541824-28541945,28542887-28543193
Length = 381
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = +3
Query: 204 CLWVLFCRGLPLFMSKSSFKGGAVIVFQLKCTKSHVCQSHV-KYLVFC-DSDP-PQPHRQ 374
CLW ++C +P S AV+ L+ C S + + C D++P +P
Sbjct: 286 CLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEMPRCCPSSLANVMKRCWDANPDKRPEMA 345
Query: 375 QVIERVRVAADMNPGNPQPADRRIG 449
+V+ + G P D+R G
Sbjct: 346 EVVSMLEAIDTSKGGGMIPVDQRQG 370
>04_03_1012 - 21711945-21714002
Length = 685
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 197 EMLKLLTSLESIVSVMGKHHTTHKIFDRCLNLANVIFKLSLHIYKFRTTF 48
E L+L L+ SV H+T + + C NLAN+ H++ + F
Sbjct: 364 EALRLFVRLKR-ESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGF 412
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,276,989
Number of Sequences: 37544
Number of extensions: 522343
Number of successful extensions: 1203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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