Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2085
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0437 - 9399982-9401253 31 0.96
04_04_1559 - 34428286-34429062 30 2.2
09_02_0373 - 8098060-8098229,8098316-8098375,8098486-8098674,809... 28 6.8
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 28 6.8
08_02_0641 + 19639211-19639366,19640376-19640882 28 6.8
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 28 6.8
01_01_1137 + 9017211-9018584 28 6.8
06_03_0685 - 23499779-23500204 28 9.0
06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390 28 9.0
02_05_0303 + 27717097-27717149,27717515-27717635,27717746-277180... 28 9.0
>09_02_0437 - 9399982-9401253
Length = 423
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 613 SGFAVAHSRGRIAVTIPIAAGVTPSCRPNTFIC 515
S ++VA SRG + + +AAG P C P +C
Sbjct: 112 SSWSVADSRGSLVLLRSLAAGHAPFCFPEVVVC 144
>04_04_1559 - 34428286-34429062
Length = 258
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 593 QQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQQA 453
++G RR +S GRD ++ H H R+ R G + ++ R +A
Sbjct: 110 ERGAERRRESCERGRDRRIRTSHHHPRRIRATVGRRDDRIQARRSEA 156
>09_02_0373 -
8098060-8098229,8098316-8098375,8098486-8098674,
8098994-8099108,8099374-8099427,8099600-8099709,
8099792-8099879,8099969-8100181
Length = 332
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3
Query: 582 LPLLWATAKPLFGYVVDYWPAHRKLVFMLLISVMTGSYCCLWFLPTP 722
LPLL A A V DYW + + LI + S+C L F P P
Sbjct: 227 LPLLTA-ALVAVSRVDDYWHHWQDVFAGSLIGLTVASFCYLQFFPYP 272
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -2
Query: 685 VITDISSMNTSFLCAGQ*STT*PKSGFAVAHSRGRIAVTIPIAAGVTPSCRPNTFICG 512
V T + M LCAG + T + FA A + G A+ +AAG P R CG
Sbjct: 720 VATGMEGMAGRVLCAGMAAVTGAMAEFADASADGYDALVSAVAAG-APGRRKEEPTCG 776
>08_02_0641 + 19639211-19639366,19640376-19640882
Length = 220
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 531 GRQLGVTPAAMGIVTAILPLLWATAKPLFGY 623
G +LGV+P A+G +T ++ A + PL Y
Sbjct: 133 GAELGVSPTALGSLTLCRAIVQAASYPLAAY 163
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 660 ILASCAPANNLQRSRRVASQSPTAGAESPSRFPSLRA*LPV 538
+ A+ +P+ +++R+ A+ SP+ A PS RA LPV
Sbjct: 541 VQAAASPSRSVRRAAASAAPSPSLAACQVPEAPSARAPLPV 581
>01_01_1137 + 9017211-9018584
Length = 457
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -2
Query: 604 AVAHSRGRIAVTIPIAAGVTPSCRPNTFICGNSGPRAAKKKKKCAFTGSKLLLI 443
A HS R+ VT +A P RP GP A + A G++ L+
Sbjct: 8 AACHSPARLVVTCSSSATPAPPRRPLRVAVVGGGPAGASAAEALASAGAQAFLL 61
>06_03_0685 - 23499779-23500204
Length = 141
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -1
Query: 623 VAEEWLRSRPQQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGG 492
VA E +R RP +G R R GR LPP + ++ P+GG
Sbjct: 33 VAVERIRLRPPRGGRIRRWPPRRGRIRGLPPLGGRICRRPPRGG 76
>06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390
Length = 519
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +1
Query: 529 SGGNWESRPQ-RWES*RRF-CPCCG 597
SGGNW +RP WE RR C CG
Sbjct: 320 SGGNWFNRPNYLWEGGRRVGCVKCG 344
>02_05_0303 +
27717097-27717149,27717515-27717635,27717746-27718057,
27718172-27718276,27718367-27718821,27718964-27719094,
27719215-27719268,27719378-27719747,27719848-27719981,
27720081-27720319
Length = 657
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 96 ITHHNFITLNHVLIEMLDCSVKNTLHNRAATLFLSQHSLM 215
I H ITL +IE ++ SV+ H F+ QH+L+
Sbjct: 188 IYDHPSITLKDPIIEQINHSVQKLTHATNLLQFIGQHALI 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,873,178
Number of Sequences: 37544
Number of extensions: 385647
Number of successful extensions: 1040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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