Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2085
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    26   0.43 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    26   0.43 
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.2  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 663 MLLISVMTGSYCCLWFLPTPETVEPP 740
           MLLI  + G+ C +W   T +++  P
Sbjct: 66  MLLIMSLVGNCCVIWIFSTSKSLRTP 91


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 663 MLLISVMTGSYCCLWFLPTPETVEPP 740
           MLLI  + G+ C +W   T +++  P
Sbjct: 66  MLLIMSLVGNCCVIWIFSTSKSLRTP 91


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 123 NHVLIEMLDCSVKNTLHNRAATLFLSQHSLMNTV 224
           N ++I  LDCS+K   HN   +++ S + L   V
Sbjct: 18  NQMMIWALDCSIKPKDHN--GSIYWSMYHLCTVV 49


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 605 RSRPQQGQNRRHDS-HRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQQ 456
           +S+P   Q   H S H   +    P +    +QQ+PQ  +++++ +  +Q+
Sbjct: 806 QSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQR 856


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +3

Query: 48  FQMLLLLINKSENPRLITHHNFITLNHVLIEMLDCSVKNTLHNRAATLFLSQHSLMNTVE 227
           + +L  ++  SE P L+       +  + +E L   V N       T+F    S++  + 
Sbjct: 476 YALLTAIVIFSERPNLLEGWKVEKIQEIYLEALRAYVDNRRRPNPGTVFARLLSVLTELR 535

Query: 228 *KLHFNH---FNLLWKQTKIIIY 287
              + N    F+L +K  K+ ++
Sbjct: 536 TLGNQNSEMCFSLKFKNKKLPVF 558


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 62   EQHLKYEYWKT 30
            +QH++Y++W T
Sbjct: 1280 QQHVEYQFWVT 1290


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 62   EQHLKYEYWKT 30
            +QH++Y++W T
Sbjct: 1276 QQHVEYQFWVT 1286


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 550 VTPSCRPNTFICGNSGPRAAKK 485
           VTPSCR   +    + P  A+K
Sbjct: 97  VTPSCRRQRYNIAAANPLLAEK 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,405
Number of Sequences: 438
Number of extensions: 3957
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)