Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2084
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL110500-9|CAE54920.1|  586|Caenorhabditis elegans Hypothetical ...    28   8.4  
AL110500-8|CAB60430.1|  551|Caenorhabditis elegans Hypothetical ...    28   8.4  
AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical ...    28   8.4  

>Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical
           protein T02E9.1 protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 560 FAVFLIKMRLLYYYELLLFCKIWTDCRGLYQ-RIPSAKSTYLFRWTRSFFLSCH 718
           F  FL+   LL Y+   +  ++    R + Q RIP  + T        F+LSCH
Sbjct: 208 FFAFLLPCTLLTYFYAKIVLRLRRQRRTMLQSRIPLRRITIYTMAATFFYLSCH 261


>AL110500-9|CAE54920.1|  586|Caenorhabditis elegans Hypothetical
           protein Y87G2A.8b protein.
          Length = 586

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 749 FSNEIITYSWHGTTEKTIWSI*ISR*ILPKGSSDINPCNRSKFCKKVKVHNNIAIAS 579
           F NEII+ SW G T K I  + ++   +  G SD+ P   ++  K  ++  N+   S
Sbjct: 166 FCNEIISGSWTGYTGKKITDV-VN---IGIGGSDLGPLMVTESLKNYQIGPNVHFVS 218


>AL110500-8|CAB60430.1|  551|Caenorhabditis elegans Hypothetical
           protein Y87G2A.8a protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 749 FSNEIITYSWHGTTEKTIWSI*ISR*ILPKGSSDINPCNRSKFCKKVKVHNNIAIAS 579
           F NEII+ SW G T K I  + ++   +  G SD+ P   ++  K  ++  N+   S
Sbjct: 131 FCNEIISGSWTGYTGKKITDV-VN---IGIGGSDLGPLMVTESLKNYQIGPNVHFVS 183


>AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.12 protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 183 LCLFCREAVMRFGLKGGAAVVTILETLELISQG 281
           +C   R AV++FG+     +V I+ET+  +S G
Sbjct: 131 VCSSLRTAVVKFGMHFDKVMVAIIETMVFLSLG 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,911,877
Number of Sequences: 27780
Number of extensions: 349585
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)