Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2081
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         28   7.6  
11_06_0179 + 20952070-20955228                                         28   10.0 

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 450 SIVTTAAPPFKPKRITS 500
           S+ + AAPPF P RITS
Sbjct: 165 SVASAAAPPFDPSRITS 181


>11_06_0179 + 20952070-20955228
          Length = 1052

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 181 RFFYYDRAIFTNITAAHCTRNTFRLN 258
           R+ YY+ AI T +   +C RN F  N
Sbjct: 172 RYQYYNNAINTTVCCMNCRRNFFAYN 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,098,581
Number of Sequences: 37544
Number of extensions: 449859
Number of successful extensions: 883
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)