Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2081
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80024-3|AAK18893.1|  342|Caenorhabditis elegans Seven tm recept...    29   2.9  
Z92797-4|CAB07238.3|  478|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z92797-3|CAB07237.2|  445|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z83118-3|CAB05577.3|  478|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z83118-2|CAB05576.2|  445|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear horm...    28   6.8  
AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical...    28   9.0  

>U80024-3|AAK18893.1|  342|Caenorhabditis elegans Seven tm receptor
           protein 190 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +1

Query: 127 ILQIFFGLSNSFLGYFTARFFYYDR--AIFTNITA--AHCTRNTFRLNKAPCESIFGKLC 294
           I+    GL    + YF A+F+ +D+   +  N+ A    C  +    +   C  IFG LC
Sbjct: 160 IVDCTVGLPIENVTYFGAKFYNFDKNETMSINLPAWIGVCQTSFMVSSSLMCVFIFGVLC 219

Query: 295 YQNLND 312
           Y+ L++
Sbjct: 220 YKRLSN 225


>Z92797-4|CAB07238.3|  478|Caenorhabditis elegans Hypothetical
           protein H25P06.2b protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 536 LWVPPPRLFLP*RSNAFRLEGWGGRCNYTE--TLELISQG 423
           LW  PP L L  R    +++ WG  C   E  T + I QG
Sbjct: 262 LWYRPPELLLGDRQYGTKIDVWGAGCIMAEMWTRQPIMQG 301


>Z92797-3|CAB07237.2|  445|Caenorhabditis elegans Hypothetical
           protein H25P06.2a protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 536 LWVPPPRLFLP*RSNAFRLEGWGGRCNYTE--TLELISQG 423
           LW  PP L L  R    +++ WG  C   E  T + I QG
Sbjct: 262 LWYRPPELLLGDRQYGTKIDVWGAGCIMAEMWTRQPIMQG 301


>Z83118-3|CAB05577.3|  478|Caenorhabditis elegans Hypothetical
           protein H25P06.2b protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 536 LWVPPPRLFLP*RSNAFRLEGWGGRCNYTE--TLELISQG 423
           LW  PP L L  R    +++ WG  C   E  T + I QG
Sbjct: 262 LWYRPPELLLGDRQYGTKIDVWGAGCIMAEMWTRQPIMQG 301


>Z83118-2|CAB05576.2|  445|Caenorhabditis elegans Hypothetical
           protein H25P06.2a protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 536 LWVPPPRLFLP*RSNAFRLEGWGGRCNYTE--TLELISQG 423
           LW  PP L L  R    +++ WG  C   E  T + I QG
Sbjct: 262 LWYRPPELLLGDRQYGTKIDVWGAGCIMAEMWTRQPIMQG 301


>AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 122 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 565 SKKYKLLCNALYLTAENKSQHGFFIYFTAMKR 660
           S  YK+L +   +   NK  H FF YF   KR
Sbjct: 342 SSTYKMLDDMELMYIMNKQDHSFFKYFVESKR 373


>AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.28 protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 273 FTRSLVQPKRISSTMCGRNVCKYSAVVIKESCGKIAQKRIRQTKE 139
           FT + V+ K +    C  N CKY++      C K   K I+ T +
Sbjct: 587 FTTTCVEVKNVKVVTC--NQCKYTSQFASSECIKKEHKLIKHTAD 629


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,058,131
Number of Sequences: 27780
Number of extensions: 404640
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)