Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2081
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    28   0.088
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   4.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   7.7  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 28.3 bits (60), Expect = 0.088
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 802 SRPWLLANNIIMYVTRKH*SCQH 734
           SRPWLL  +I  +   K  SCQH
Sbjct: 53  SRPWLLQGHIRTHTGEKPFSCQH 75


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 535 CGYHRPAYFYREEVMRFGLK 476
           CG HR  Y + +++    LK
Sbjct: 546 CGLHRDTYIHAQQIAWMALK 565


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 210 YKHYGRTLY*KYVSVEQ 260
           YK+Y + LY   +++EQ
Sbjct: 329 YKNYNKKLYYNIINIEQ 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,745
Number of Sequences: 438
Number of extensions: 5113
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)