Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2076
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0590 + 34932012-34932641                                         30   1.8  
08_02_0886 - 22270615-22270911,22271903-22272303,22272372-22272714     30   2.4  
04_04_0413 + 25032061-25032304,25032604-25032627,25033618-25033940     29   3.2  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    29   5.5  
03_02_0099 - 5614007-5614233,5614725-5614998,5615086-5616179,561...    29   5.5  
08_02_0760 + 20866456-20866609,20866685-20866839                       28   7.3  
07_01_1166 - 11025276-11025374,11025508-11026431                       28   9.6  

>03_06_0590 + 34932012-34932641
          Length = 209

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 508 IDLGGHVEYAAHDRHCPPEAEYPVEMKSCYFSIVPFVIREIEVVR 374
           +DL G V+YA H   C  EA  P++++      V F     +++R
Sbjct: 159 VDLSGEVKYALHSAWCRVEARCPLKLQLAAAGSVAFQETTCDMLR 203


>08_02_0886 - 22270615-22270911,22271903-22272303,22272372-22272714
          Length = 346

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = +2

Query: 572 HGKCSYYCDTGHAICGNP-----DMLEGSFAAFLPSSDVAERKVWRHPW 703
           H KC Y  D  H I G P     + + G    F+PS+DV   K   H W
Sbjct: 207 HIKC-YVLDLPHVIHGTPTDGIVEFVAGDMMHFVPSADVVLLKFVLHDW 254


>04_04_0413 + 25032061-25032304,25032604-25032627,25033618-25033940
          Length = 196

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -2

Query: 737 IALSCAYDMNASMDDAKPSSQQHQKTAKKRRSFPPTCQGCR 615
           +A   ++ MNA++ +AK  + Q+Q+ A+K  +   TC+  R
Sbjct: 120 VAEEHSHHMNATLVEAKRQATQYQREAEKCNAATETCEEAR 160


>04_04_1571 +
           34504087-34504421,34505002-34505731,34506091-34512077,
           34512493-34513964,34514114-34514377,34514761-34514978,
           34515759-34516030,34516190-34516559,34516578-34516797,
           34516819-34518931,34518941-34519193,34519269-34519401,
           34520597-34521114,34521207-34522115,34522195-34522368,
           34522833-34522882,34523963-34524035,34524413-34524477,
           34524736-34525522,34525622-34525878,34525989-34526109,
           34526315-34526956
          Length = 5320

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 197 LYEDG-EILVEAILKDMATLPVLHAEQKEGGT 289
           LYE+   ILVE I K + T PV H+E K GGT
Sbjct: 447 LYEEPWSILVEQICKFIYTSPVFHSEIK-GGT 477


>03_02_0099 -
           5614007-5614233,5614725-5614998,5615086-5616179,
           5616674-5616772,5617371-5617389
          Length = 570

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 645 KLPSNMSGLPHIACPVSQ*YEHLPWKQKLFAGDTKNVLSMSPS 517
           KL +N +    I+C +      +PWK   F+GD++ ++  S S
Sbjct: 273 KLKANGASCLAISCELLDAIAKIPWKAPCFSGDSEWIVGASAS 315


>08_02_0760 + 20866456-20866609,20866685-20866839
          Length = 102

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -1

Query: 171 NFSRLDALTLSSKSSISPIVGF-SGLK 94
           NFS LD L LS+ S++S  VG+ SG+K
Sbjct: 28  NFSALDYLRLSTISAVSVTVGYLSGIK 54


>07_01_1166 - 11025276-11025374,11025508-11026431
          Length = 340

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
 Frame = +2

Query: 623 PDMLEGSFAAFLPSSDVAERKV----WRHPW 703
           PD + GS  + LP+ D A   V    WRH W
Sbjct: 40  PDEILGSIISLLPTKDAARTTVLSPRWRHLW 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,167,498
Number of Sequences: 37544
Number of extensions: 464501
Number of successful extensions: 1360
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)