Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2076
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.20 
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   7.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = -1

Query: 693  RQTFLSATSEDGKKAAKLPSNMSGLPHIACPVSQ*YEHLPWKQKLFAGDTKNVLSMSP 520
            ++ F S     G    K+PS M G+PH+       +   P+    F     NV ++ P
Sbjct: 1129 QKPFTSPGGIPGPNGIKMPSFMEGMPHLPFTPFNFWNPPPFMPSPFMAGAPNVPTILP 1186


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = +2

Query: 362 VQTLPNHFYFSDYERHNAEIAAFHLDRILGFRRAMPV 472
           + +L N++ +S+Y  +N +   ++++ I      +PV
Sbjct: 82  ISSLSNNYNYSNYNNNNYKQLCYNINHIEQIPVPVPV 118


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 9   TYNKSCSLSYRGP 47
           TY ++  L YRGP
Sbjct: 421 TYGRNAGLRYRGP 433


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 269 EQKEGGTQLKLIIDYPNGVQALFKP 343
           +Q+ GG +  L+  +  G  ALF P
Sbjct: 42  QQRRGGLEYFLLSAFLFGANALFTP 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,839
Number of Sequences: 438
Number of extensions: 4793
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)