Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2075
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043700-8|AAB97574.2|  374|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z70311-6|CAA94379.3|  442|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AF043700-8|AAB97574.2|  374|Caenorhabditis elegans Hypothetical
           protein K09H9.1 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -1

Query: 471 TTRCSCL----LKIIINYKLLFANDLNVYAFRHKSELNEHAFSDSVS 343
           T +C CL    L   INY+LLF     +  F+ K+    H F D VS
Sbjct: 329 TGKCFCLKNLRLNSCINYQLLFEKQFLIQFFKEKTGFMRH-FYDLVS 374


>Z70311-6|CAA94379.3|  442|Caenorhabditis elegans Hypothetical
           protein T25B9.8 protein.
          Length = 442

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 80  QLSQFSVALKGQKQSQ*V-PNDHSNVTSLTTSFGCENHSDEIVESSTSNVN 229
           QLSQ SV  + +   Q V PN+    +S+   F   + +   +  S+ NVN
Sbjct: 120 QLSQTSVGRERRSDEQSVFPNEMEEESSMDNEFDANSENSNDMAQSSPNVN 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,409,053
Number of Sequences: 27780
Number of extensions: 185058
Number of successful extensions: 398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)