Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2072
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    29   0.58 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    28   1.3  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   3.1  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   4.1  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    27   4.1  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    27   4.1  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    26   7.1  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    25   9.4  

>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 767  HPQVLHHHKLQEFLVGQQLLCSISFEKIVHQ 675
            H  VL   K  EF +GQ+LL    FEK+ +Q
Sbjct: 1215 HIDVLELEKENEFTIGQKLLVKGRFEKMTYQ 1245


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
 Frame = +2

Query: 512 KGLYTDLFEKGRVNPNGCPITATFYV-----SHEWTDYSQVQNLYSAGHEMASHTISHSF 676
           + ++TDL+E    +PN   +T+   +     S      S   N +S  H+        S 
Sbjct: 217 RNIHTDLYETHASSPNSLLVTSLAEIWKSEASRRNLTSSDETNSFSKLHQSQFGLKEESS 276

Query: 677 GEQFSQKKWNREVAGQREILAAYGGVKLEDVRGMRAPFL 793
            E  S + W  EVA  +++L      KLE    +  P +
Sbjct: 277 HEPRSSQHWKNEVA-MKDLLKNLIKSKLESSSDVNTPLI 314


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 177 QRISLRRVDQMHLCRHPTEEHPQHAAGRH 263
           + ISL+ +D  H C H  E H  H    H
Sbjct: 561 ESISLQNLDNDHHCHHHHENHNMHGIFLH 589


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 326 PSRPASVYPQPTPDKTAA 379
           P RPAS+ PQPT   T A
Sbjct: 271 PKRPASIAPQPTGASTIA 288


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 589 DIKCCRNRTAVRVDTTFLKEVSIQAFVQIVD 497
           D +CCR    +R+   F  E + Q+F+Q+ D
Sbjct: 346 DFRCCREERLLRLLLCFDSEHTGQSFIQLND 376


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = -3

Query: 561 PFGLTRPFSKRSVYRPLFKSLTESSNVRRTICGTD---STGKSPGISFP---PQ*QSGNK 400
           PFG   PF      +P+F S+  S      I G+D     G  P  + P   P+ +S N+
Sbjct: 143 PFGFAGPFGAMPGSQPMFPSIGASDLYPAGIGGSDMGNDGGMIPTFNHPIFHPENRSRNE 202

Query: 399 QTS 391
           Q S
Sbjct: 203 QAS 205


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 482 TFDDSVNDLNKGLYTDLFEKGRVNPN-----GCPITATFYVSHEWTDYSQVQN 625
           T DD+  D++   Y D+F+   +N +       P    ++V H WT   + +N
Sbjct: 75  TGDDTATDVSSAQYIDIFQNKLLNGSIPVNFSYPENPLYFVKH-WTPVIKAEN 126


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 777 IPLTSSSFTPP*AARISRWPATS 709
           IP+T+S  +PP A  +S  P TS
Sbjct: 579 IPVTASETSPPHAPAVSSTPVTS 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,603
Number of Sequences: 5004
Number of extensions: 74404
Number of successful extensions: 217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)