Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2072
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0433 + 3794440-3794948,3795696-3796707                           30   1.8  
06_03_1143 + 27971561-27972670,27973868-27974458                       29   3.2  
03_02_0816 + 11487811-11488708,11488835-11489235                       29   4.3  
08_02_1614 - 28243532-28244589,28245149-28245383,28245524-282457...    29   5.6  
06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445           29   5.6  
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110...    28   9.8  
03_06_0733 + 35825541-35826052,35826728-35826871,35828638-358287...    28   9.8  

>08_01_0433 + 3794440-3794948,3795696-3796707
          Length = 506

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -2

Query: 250 ACW---GCSSVGWRQRCI*STRRREMR*TAP 167
           ACW   G    GWR RC   + RRE R +AP
Sbjct: 23  ACWRRGGRCEPGWRSRCEGDSARRERRASAP 53


>06_03_1143 + 27971561-27972670,27973868-27974458
          Length = 566

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 377 AKCRKDVCLLPDCYCGGKEIPGDL--PVESVPQIVLLTFDDSVNDLNKGLYTDLFEK 541
           A CR  +C +  C C G +IP +L   +E V + V++     + D    L T LF K
Sbjct: 178 ANCRLSICSILICICFGAKIPDELIREIEEVLKDVMMMTMPKLPDF-LPLLTPLFTK 233


>03_02_0816 + 11487811-11488708,11488835-11489235
          Length = 432

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
 Frame = -1

Query: 482 SEEQFAGPTPPVSLL---EFPFHRSSSLATN----KRLSCISPLSYPVLVEDKQTLVYWA 324
           SEE +  P   +  +    FP  + SS  T+    ++LSC +P     +V+  +TLV+  
Sbjct: 241 SEEHYPSPDSVLDAITSPRFPCRKRSSPCTDLDADRKLSCGTPAVGSKIVKPSRTLVFSG 300

Query: 323 DGCR 312
           D C+
Sbjct: 301 DYCK 304


>08_02_1614 -
           28243532-28244589,28245149-28245383,28245524-28245734,
           28245834-28245907,28246465-28246665
          Length = 592

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 611 SQVQNLYSAGHEMASHTISHSFGEQFSQKKWNRE-VAGQREILAAYG 748
           S+   LYS  ++    T S     Q  Q KW +E +A  +E +A +G
Sbjct: 281 SKKLKLYSGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFG 327


>06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445
          Length = 352

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 422 GGKEIPGD---LPVESVPQIVLLTFDDSVNDLNKGLYTDLFEKGRVNPNGCPIT-ATFY 586
           GG E+  D   +PV S+P  +L+   D    +  G Y     +  VN +   ++ ATFY
Sbjct: 241 GGLEVLKDGLWIPVPSLPDGILVILADQTEIITNGRYKSAVHRAIVNADRARLSVATFY 299


>09_01_0076 +
           1105331-1105453,1106559-1106705,1107046-1107195,
           1107272-1107531,1107897-1108084,1108187-1108311,
           1108485-1108521,1108802-1108893,1109023-1109133,
           1109242-1109352,1109576-1109669,1109833-1109945,
           1110316-1110411,1110510-1110617,1110665-1110814,
           1110910-1110990,1111205-1111276,1111553-1111646,
           1111759-1111787,1111870-1111967,1112065-1112160,
           1112399-1112620,1113002-1113158,1113472-1113627,
           1113703-1113930
          Length = 1045

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 722 QREILAAYGGVKLEDVRGMR 781
           Q E+++A GGV L+DV+G+R
Sbjct: 395 QAELVSARGGVVLDDVQGLR 414


>03_06_0733 +
           35825541-35826052,35826728-35826871,35828638-35828709,
           35829232-35829739
          Length = 411

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +2

Query: 536 EKGRVNPNGCPITATFYVSHEWTDYSQVQNLYSAGHEMASHTISHSFGEQFSQKKWNR 709
           E+ R +PN   IT     +H W     V   Y+  H     T S S  +Q  Q++ N+
Sbjct: 261 ERSRSDPNMLVITYAAEHNHPWPMQRNVLAGYARSHHSTHATASSSRHKQQQQQQTNQ 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,452,532
Number of Sequences: 37544
Number of extensions: 519070
Number of successful extensions: 1555
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)