Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2072
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 107 7e-24
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 107 7e-24
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 107 7e-24
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 95 5e-20
AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical ... 30 2.2
U55364-5|AAQ23124.1| 368|Caenorhabditis elegans Prion-like-(q/n... 29 5.1
U55364-4|AAA97972.1| 382|Caenorhabditis elegans Prion-like-(q/n... 29 5.1
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 29 5.1
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 29 5.1
Z93377-10|CAB07574.2| 321|Caenorhabditis elegans Hypothetical p... 28 6.7
AF047657-3|AAK18947.2| 326|Caenorhabditis elegans Serpentine re... 28 6.7
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 107 bits (258), Expect = 7e-24
Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 3/147 (2%)
Frame = +2
Query: 362 PDKTAAKCRKD-VCLLPDCYCG--GKEIPGDLPVESVPQIVLLTFDDSVNDLNKGLYTDL 532
P + +C +D C LP C+C GK P + + VPQ+V+L+FDD + D L
Sbjct: 18 PSRLLTECPRDGSCRLPSCFCTSTGKIPPNNFDTKQVPQMVMLSFDDPITDRIINTLKSL 77
Query: 533 FEKGRVNPNGCPITATFYVSHEWTDYSQVQNLYSAGHEMASHTISHSFGEQFSQKKWNRE 712
F NPNGC I TF+VSH+W +Y Q L+S HE+ ++I+ +Q++W +E
Sbjct: 78 FSGSIRNPNGCAIKGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITREDLSGRTQERWYKE 137
Query: 713 VAGQREILAAYGGVKLEDVRGMRAPFL 793
G RE LA + + + G RAP L
Sbjct: 138 QKGMRETLAEFSFIDRSHIIGTRAPEL 164
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 107 bits (258), Expect = 7e-24
Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 3/147 (2%)
Frame = +2
Query: 362 PDKTAAKCRKD-VCLLPDCYCG--GKEIPGDLPVESVPQIVLLTFDDSVNDLNKGLYTDL 532
P + +C +D C LP C+C GK P + + VPQ+V+L+FDD + D L
Sbjct: 2087 PSRLLTECPRDGSCRLPSCFCTSTGKIPPNNFDTKQVPQMVMLSFDDPITDRIINTLKSL 2146
Query: 533 FEKGRVNPNGCPITATFYVSHEWTDYSQVQNLYSAGHEMASHTISHSFGEQFSQKKWNRE 712
F NPNGC I TF+VSH+W +Y Q L+S HE+ ++I+ +Q++W +E
Sbjct: 2147 FSGSIRNPNGCAIKGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITREDLSGRTQERWYKE 2206
Query: 713 VAGQREILAAYGGVKLEDVRGMRAPFL 793
G RE LA + + + G RAP L
Sbjct: 2207 QKGMRETLAEFSFIDRSHIIGTRAPEL 2233
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 107 bits (258), Expect = 7e-24
Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 3/147 (2%)
Frame = +2
Query: 362 PDKTAAKCRKD-VCLLPDCYCG--GKEIPGDLPVESVPQIVLLTFDDSVNDLNKGLYTDL 532
P + +C +D C LP C+C GK P + + VPQ+V+L+FDD + D L
Sbjct: 959 PSRLLTECPRDGSCRLPSCFCTSTGKIPPNNFDTKQVPQMVMLSFDDPITDRIINTLKSL 1018
Query: 533 FEKGRVNPNGCPITATFYVSHEWTDYSQVQNLYSAGHEMASHTISHSFGEQFSQKKWNRE 712
F NPNGC I TF+VSH+W +Y Q L+S HE+ ++I+ +Q++W +E
Sbjct: 1019 FSGSIRNPNGCAIKGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITREDLSGRTQERWYKE 1078
Query: 713 VAGQREILAAYGGVKLEDVRGMRAPFL 793
G RE LA + + + G RAP L
Sbjct: 1079 QKGMRETLAEFSFIDRSHIIGTRAPEL 1105
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 95.1 bits (226), Expect = 5e-20
Identities = 56/146 (38%), Positives = 75/146 (51%), Gaps = 24/146 (16%)
Frame = +2
Query: 428 KEIPGDLPVESVPQIVLLTFDDSVNDLNKGLYTDLFE----------------------- 538
K G L + PQ V+LTFDD+VN Y LFE
Sbjct: 1492 KTSSGCLRPDETPQFVVLTFDDAVNGKTFSDYKKLFENDVLKSFKFKIKNFKKVIPNTLS 1551
Query: 539 -KGRVNPNGCPITATFYVSHEWTDYSQVQNLYSAGHEMASHTISHSFGEQFSQKKWNREV 715
K +NPNGC + ATF++SHEWT+Y V L E+AS++ISH E + +W E+
Sbjct: 1552 LKNTINPNGCDVKATFFISHEWTNYDAVNWLVQKNMEIASNSISHESLENANTNRWLNEM 1611
Query: 716 AGQREILAAYGGVKLEDVRGMRAPFL 793
GQR ILA +GG E++ G+R+P L
Sbjct: 1612 DGQRRILAKFGGAPEEEIVGIRSPQL 1637
>AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical
protein B0205.10 protein.
Length = 455
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 350 PQPTPDKTAAKCRKD---VCLLPDCYCGGKEIPGDLPVESVPQIV 475
P+PTPD AA ++ V P+ E P PV+ PQ+V
Sbjct: 103 PEPTPDAPAAAPVQETPQVAPAPETPAPAPETPAPAPVQETPQVV 147
>U55364-5|AAQ23124.1| 368|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
isoform b protein.
Length = 368
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -1
Query: 557 SG*HDLSQRGQYTGLCSN--R*RNRQMSEEQFAGPTPPVSLLEFPFHRSS 414
+G + + Q GQ G +N +N QMS+ Q + + VSL+++ F+ +
Sbjct: 114 AGQNQMGQSGQVQGYSNNGYSNQNSQMSQSQASSGSSSVSLMDYSFNNGN 163
>U55364-4|AAA97972.1| 382|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
isoform a protein.
Length = 382
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -1
Query: 557 SG*HDLSQRGQYTGLCSN--R*RNRQMSEEQFAGPTPPVSLLEFPFHRSS 414
+G + + Q GQ G +N +N QMS+ Q + + VSL+++ F+ +
Sbjct: 128 AGQNQMGQSGQVQGYSNNGYSNQNSQMSQSQASSGSSSVSLMDYSFNNGN 177
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +2
Query: 269 PSTAIVSKTTEFVDI---YNHPPSRPASVYPQPTPDKTAAKC--RKDVCLLPDCY 418
P+ I S + +D+ YN PP R SV DK+ C D LPD Y
Sbjct: 348 PTGYICSCNSNCIDVSSRYNLPPGRKCSVAANQCSDKSLNSCDENADCVQLPDGY 402
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +2
Query: 269 PSTAIVSKTTEFVDI---YNHPPSRPASVYPQPTPDKTAAKC--RKDVCLLPDCY 418
P+ I S + +D+ YN PP R SV DK+ C D LPD Y
Sbjct: 348 PTGYICSCNSNCIDVSSRYNLPPGRKCSVAANQCSDKSLNSCDENADCVQLPDGY 402
>Z93377-10|CAB07574.2| 321|Caenorhabditis elegans Hypothetical
protein F13A7.2 protein.
Length = 321
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/64 (21%), Positives = 27/64 (42%)
Frame = +1
Query: 133 VSIHAKTYEYTWARFSAFLYVEWIRCTSAATQPRNTPNTQPADIETLHSYCLKNDRVCRH 312
++++ Y +T Y + CT+ TQ +I+ HS L D C++
Sbjct: 24 ITMYILIYNFTGKTLQTVKYFLYPSCTAMLIAMTMAFATQTRNIDNTHSMALLCDGFCKY 83
Query: 313 LQPS 324
+ P+
Sbjct: 84 IGPT 87
>AF047657-3|AAK18947.2| 326|Caenorhabditis elegans Serpentine
receptor, class h protein272 protein.
Length = 326
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 600 GLITAKFRTSILLDTRWPHTRFPIALVNNFL 692
G+ +F LD+ W + RFP L N+F+
Sbjct: 111 GIFENRFYVMFALDSFWRYFRFPFFLFNHFI 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,829,600
Number of Sequences: 27780
Number of extensions: 437377
Number of successful extensions: 1350
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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