Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2072
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   7.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 312 STTIRPVDQRLFILNQHRIRQRRNAGKTFVCCQT 413
           STTI P+   L  +        RNA K  +CC+T
Sbjct: 320 STTINPILYNLMSIKY------RNAFKQTICCKT 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 561 AVRLRQHFMSPTNGLITAKFRTSILLDTRWPHTR-FPIALVNNFLK 695
           A+RL  +F+S  NG+ T+   + +LL+    H   F  A +   LK
Sbjct: 530 AIRLDGNFLSDINGVFTS-IASLLLLNLSENHIEWFDYAFIPGNLK 574


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 164 RGRGSAHFSTSSGS 205
           RGRGS H  +++GS
Sbjct: 309 RGRGSVHNGSNNGS 322


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = -2

Query: 529 VSIQAFVQIVDGIVKCQKNNLRDRLHR*VSWNFLSTAVAVWQQTNVFPAFRRCLIRCWLR 350
           V+  AF   + G+V    + + + L     W F +    VW+  +V  +    L  C + 
Sbjct: 84  VTSLAFADCLVGLVVMPFSAIYEVLEN--RWLFTTDWCDVWRSLDVLFSTASILNLCVIS 141

Query: 349 INRRWS 332
           ++R W+
Sbjct: 142 LDRYWA 147


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 486 NVRRTICGTDSTGKSPGISFPPQ*QSGNKQTSF 388
           N RRT    D T K P +  PP   +    T F
Sbjct: 179 NERRTPDPHDETAKKPRVLSPPLNNNDATPTDF 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,585
Number of Sequences: 438
Number of extensions: 5440
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)