Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2071
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    30   0.43 
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   3.0  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.3  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   5.3  
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    25   9.2  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   9.2  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    25   9.2  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   9.2  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 218 PSHC-RPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQ 90
           PSH  R  LHP ++ Q QP   S + G ++ + +Q P+ +  +Q
Sbjct: 54  PSHLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQ 97


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 406 VNCYDYMAIHKKGGYGCTGELP 471
           +N  DY+ ++  GGYGC+ + P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 224 VSPSHCRPCLHPEIAWQMQPRHT 156
           VS  HC  C H E  W    R+T
Sbjct: 204 VSLKHCEDCFHWEAVWSSITRNT 226


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 591 NPSVIVSISTNIIFTMNLYNSSRIGINNVHIKAFSSKDSSCIRNTNWKM 737
           +P  ++ + T   F   L++S R+ ++ VHI A  S+  + + NTN  M
Sbjct: 176 DPRSVMQVQTIRAFEF-LFSSHRLYLDTVHITAALSQVLAGLGNTNTSM 223


>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 302 ASGERPLIVG--FPASAQ*PHVMRKRPHVSPSHCRPCLHPEIAWQMQPR 162
           A G++ LIVG    A+ +  HV+    HV     +  L  E+AW++Q +
Sbjct: 20  AQGKKVLIVGGGVVAAGRILHVLNADAHVIVVSPKAGLCKEVAWRIQEK 68


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -3

Query: 480 IVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSSHVVLDG---LRGAVRVYSAARVG 310
           I +R  AG  + SLL   + VI V+H ++V         VL G   + G V +  + R G
Sbjct: 252 IKQRLKAGRVIRSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREG 311

Query: 309 I 307
           I
Sbjct: 312 I 312


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 148 QGGVPKHRRNRLRQP 104
           +G + KHR+NRLR+P
Sbjct: 93  EGKLGKHRKNRLRRP 107


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 140 SSETSAKQTPATNSNAQNLITAEAIA 63
           SS T+A  TP  + +++  I AEAIA
Sbjct: 215 SSSTTALSTPRQSMDSKRTINAEAIA 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,718
Number of Sequences: 5004
Number of extensions: 69878
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)