Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2069
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.95 
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    27   1.7  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   2.9  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   3.8  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   5.1  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   5.1  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.9  
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb...    25   8.9  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   8.9  

>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 87  LQDNRRSTVVREKRGSSRRLELDSISKYFQSASVSHFEKAARHKKTL 227
           L++++R  ++  +R  SRR    SIS+ F   S   F     H+K+L
Sbjct: 9   LRNSKRHPLLHSERNLSRRAVSPSISRSFFQHSNGSFPLFQNHRKSL 55


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 222 TLVVAAGNYIPDPADRLVNRRHRPKHFISNLPDPQSVGTFRYLKHRS 362
           TLV     YI   A  L+ +  +    +S LPD  S+G + Y +  S
Sbjct: 77  TLVDTLETYIDQGATDLIEQVEQEMKDVSELPDWYSIGLWNYCQGNS 123


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 510 FFFFIAWMVGRAHSPPGVKWLQEPIHIYNVDAPPT 406
           F+FF+ +  G  ++  G+ W+ +  HIY+V+  P+
Sbjct: 136 FWFFLIFYYG-IYNAVGLLWITKLFHIYSVNWCPS 169


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 511  FFFFYCLDGWTSSQPTWC*VVTGAHTHLQRRRATHLEI 398
            F  +  + G   + PTW    +G HTH+   R T  E+
Sbjct: 1112 FAMYETIAGGAGAGPTWN-GTSGVHTHMTNTRITDPEV 1148


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/69 (20%), Positives = 31/69 (44%)
 Frame = +3

Query: 108 TVVREKRGSSRRLELDSISKYFQSASVSHFEKAARHKKTLVVAAGNYIPDPADRLVNRRH 287
           T+   K  + R +  +++++  +        K  + KK ++V   NY  + + RL++  H
Sbjct: 441 TISGGKWTTYREMAEETVNELIKDHDFGKALKPCQTKKLILVGGENYYKNYSARLIHEYH 500

Query: 288 RPKHFISNL 314
            P     +L
Sbjct: 501 IPLRLAKHL 509


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 318 REDSK*SV*GDVVCLPVGPQDR 253
           RE+   +V GD+VC+ + PQD+
Sbjct: 297 RENLNRAVQGDIVCIQILPQDQ 318


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = +1

Query: 250 YPILRTDW*TDDIALNTSFRIFPIHNPWVPLGTSNTVHRSR 372
           + + + DW  +D A + +F ++    PW        + R R
Sbjct: 322 FKLFQDDWLMEDCAPDANFTLYTPLQPWEKRSVKPEIRRPR 362


>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 183 SVSHFEKAARHKKTLVVAAGNYIP 254
           S+SH  K    K TL+   G+YIP
Sbjct: 167 SLSHCRKLILPKNTLLQTLGSYIP 190


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 243 NYIPDPADRLVNRRHRP 293
           NY P P  R  N RHRP
Sbjct: 483 NYYPVPEARRSNMRHRP 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,740
Number of Sequences: 5004
Number of extensions: 47071
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)