Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2069
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0122 + 1495426-1495815                                           29   1.7  
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991...    28   3.9  
03_02_0343 - 7649210-7650154                                           28   5.1  
06_03_0881 - 25623679-25623843,25624104-25624195,25624287-256244...    27   6.8  
01_06_1522 - 37962431-37963060,37963216-37963542                       27   8.9  

>10_01_0122 + 1495426-1495815
          Length = 129

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 516 FFFFFFIAWMVGRAHSPPGVKWLQEPIHIYNVD 418
           FFFFFF  ++ G   +  G +   +P+ +Y VD
Sbjct: 15  FFFFFFFFFLSGCLRAGAGDRGALDPVLLYGVD 47


>04_04_0447 -
           25297351-25297575,25297663-25298370,25298824-25299123,
           25299876-25299927,25300530-25300673,25301002-25301258,
           25301533-25301739,25301819-25301992,25302409-25302432,
           25302610-25302677,25304607-25304665,25304802-25304877,
           25304965-25305070,25305268-25305377,25305831-25305995,
           25306571-25306656,25306893-25306957,25307280-25307330,
           25309009-25309056,25309677-25309796,25310226-25310301,
           25310780-25310877,25312149-25312404,25313117-25313238
          Length = 1198

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 222 TLVVAAGNYIPDPADRLVNRRHRPK 296
           +LV A   ++P  AD  + RRHRP+
Sbjct: 10  SLVAATPRWLPVAADSFLRRRHRPR 34


>03_02_0343 - 7649210-7650154
          Length = 314

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 346 TSNTVHRSRNYTETLELVSQGGWRV 420
           T +T   S+N+ ETLELV +G  R+
Sbjct: 134 THDTQSDSQNFLETLELVDEGDMRI 158


>06_03_0881 -
           25623679-25623843,25624104-25624195,25624287-25624446,
           25624586-25624668,25624845-25624913,25625480-25625555,
           25625645-25625895,25626387-25626537
          Length = 348

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 165 KYFQSASVSHFEKAARHKKTLVVAAGNYIP 254
           KYF     SH E  A  K+TL+V++   +P
Sbjct: 146 KYFGEEKTSHAEHRALKKETLLVSSRTVVP 175


>01_06_1522 - 37962431-37963060,37963216-37963542
          Length = 318

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 489 MVGRAHSPPGVKWLQE 442
           +VG+ H PPG +WL E
Sbjct: 44  LVGQLHLPPGGRWLDE 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,531,787
Number of Sequences: 37544
Number of extensions: 340683
Number of successful extensions: 790
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)