Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2065
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0501 - 6558120-6559312,6559441-6559518,6559818-6559877,656... 33 0.10
10_08_0965 + 21915842-21916906 31 0.31
01_06_0573 + 30345935-30346429,30346523-30346690 30 0.71
08_02_1292 + 25943074-25943643 29 1.2
08_02_0830 - 21617485-21618198 29 1.2
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773... 29 1.6
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 28 2.9
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 28 2.9
07_01_0614 - 4545306-4545833 28 3.8
05_05_0098 + 22373384-22373522,22373566-22373772,22373879-223739... 28 3.8
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 27 5.0
12_01_0347 + 2658545-2659309 27 6.6
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 27 6.6
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 27 6.6
10_01_0114 + 1423051-1424319 27 8.7
10_01_0113 + 1410151-1411416 27 8.7
08_02_0839 + 21693348-21694853 27 8.7
07_01_0298 - 2158642-2158886,2159031-2159151 27 8.7
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 27 8.7
>04_01_0501 -
6558120-6559312,6559441-6559518,6559818-6559877,
6560000-6560083,6560407-6560566
Length = 524
Score = 33.1 bits (72), Expect = 0.10
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 102 PMTARSVPNP--APPVWAFL-VPLLTVRAGAITGS 197
P+T RSVPNP APP L VP + + G +TG+
Sbjct: 200 PVTVRSVPNPEDAPPCTTRLNVPAMVIELGGLTGN 234
>10_08_0965 + 21915842-21916906
Length = 354
Score = 31.5 bits (68), Expect = 0.31
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 78 WAHGNAACPMTARSVPNPAPPVWAFLVPLLTVRAGAITGSRSSLRVTSGTAN 233
W N +CP+ S+ P PP L LL V G+++ RS+ + A+
Sbjct: 160 WLRANPSCPLCRASIALPHPP----LPDLLRVELGSVSSRRSNPNSAAAVAS 207
>01_06_0573 + 30345935-30346429,30346523-30346690
Length = 220
Score = 30.3 bits (65), Expect = 0.71
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 93 AACPMTARSVPNPAPPVWAFLVPLLTVRAGAITGSRSSLRVTSGTANISIALVKRAALPQ 272
A P R+ + PP +V LL A + R LR + N+S +L+ R A +
Sbjct: 4 AGAPRRRRATRSRLPPTLLLIVLLLLGGAPRASALRVPLREVATLLNLSRSLLNRVAAAR 63
Query: 273 TGRG 284
RG
Sbjct: 64 AARG 67
>08_02_1292 + 25943074-25943643
Length = 189
Score = 29.5 bits (63), Expect = 1.2
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = +3
Query: 24 HAPTLPRIRATRTQQWCRWA------HGN-AACPMTARSVPNPAPPVWAFLVPLLTVRAG 182
HAP +R R + W RWA G+ AA + + P+PA A+ L G
Sbjct: 7 HAPKNLGLRGVRRRLWGRWAAEIRVPRGHRAAARLWIGTFPSPAAAALAYDAALYCFHGG 66
Query: 183 AITGSRS 203
A G+R+
Sbjct: 67 APPGNRA 73
>08_02_0830 - 21617485-21618198
Length = 237
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 122 SEPGASSLGVPCAPPNCARWRNHRLK 199
S +SS G+PC +C RW H+ K
Sbjct: 78 SSSSSSSSGLPCRADSCERWDAHKNK 103
>08_02_1237 +
25475219-25475916,25476127-25476320,25476407-25477302,
25477416-25477490,25477582-25477689,25477780-25477897,
25478007-25478142,25478228-25478372,25478460-25479080,
25479166-25479597
Length = 1140
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 196 EPVIAPARTVRRGTRNAQTGGAGFG 122
EPV+ P++ VR G+ + +GG G G
Sbjct: 147 EPVVRPSKRVRSGSPGSASGGGGGG 171
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 28.3 bits (60), Expect = 2.9
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +3
Query: 159 PLLTVRAGAITGSRSSLRVTSGTANISIALVKRAALPQTGRG*WQSKRESDGPRLRTKRV 338
P VR GA GS S+ R+ + +S ++V R P+ GRG K S R
Sbjct: 333 PPAAVRVGA-EGS-STRRLERLDSGLSASMVSRRGTPRAGRGASTPKLSSSTDAAAMTRS 390
Query: 339 RVRWN 353
R+R N
Sbjct: 391 RIRPN 395
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 72 CRWAHGNAACPMTARSVPNPAP 137
CRW GNA A + P+P P
Sbjct: 204 CRWLKGNAVAAEPAAATPSPLP 225
>07_01_0614 - 4545306-4545833
Length = 175
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 419 CVSPSPLVVQAYPTPSPGSVFLIPAHAHALRP 324
C+ P PL+ +A+P+P + L+P ALRP
Sbjct: 9 CLRPPPLLRRAFPSP---ATRLLPPQTLALRP 37
>05_05_0098 +
22373384-22373522,22373566-22373772,22373879-22373953,
22374611-22374744,22375189-22375674,22375854-22376621,
22377367-22377594,22378294-22378773
Length = 838
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 125 RNAPRSHRARGVSMSPSTPLLGPRRPYTRQSW 30
R+AP S RAR S+ P PL+ P T W
Sbjct: 13 RSAPSSSRARQASLRP-LPLIFPESSATASGW 43
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 3/30 (10%)
Frame = -3
Query: 122 NAPR--SHRAR-GVSMSPSTPLLGPRRPYT 42
N+P+ +H+A+ G+SM PS L+G +PY+
Sbjct: 535 NSPKKNTHKAKPGLSMPPSAVLIGAFKPYS 564
>12_01_0347 + 2658545-2659309
Length = 254
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 82 AHRHHCWVLVARIRGKVGACC 20
A RH W L R RG G CC
Sbjct: 142 ARRHRRWSLETRPRGVGGGCC 162
>11_04_0364 -
16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 114 SQSSGTRRFHEPIDTIAGSSSPVYAAKL 31
S++ G RRF I T+ +SS +YA K+
Sbjct: 146 SENDGERRFAPNIGTLPKTSSVIYAPKI 173
>05_02_0034 +
5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -3
Query: 143 NWRRRVRNAPRSHR--ARGVSMSPSTPLLGPRRPYTRQSWRVLLHTRNT 3
+W NA +R AR +++S LLG R R W +L RNT
Sbjct: 502 DWLPIGHNAVELYREQARKITISHDKLLLGAAREAIRAQWDILFLKRNT 550
>10_01_0114 + 1423051-1424319
Length = 422
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 226 VPLVTLKLDLEPVIAPARTVRRGTRNA 146
VP+V L++ P+ P T+RRG +A
Sbjct: 40 VPVVVLQVFEHPIHEPVETIRRGLSHA 66
>10_01_0113 + 1410151-1411416
Length = 421
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 226 VPLVTLKLDLEPVIAPARTVRRGTRNA 146
VP+V L++ P+ P T+RRG A
Sbjct: 40 VPIVVLQVFEHPIHEPVETIRRGLSRA 66
>08_02_0839 + 21693348-21694853
Length = 501
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +3
Query: 78 WAHGNAACPMTARSVPNPAPPVWAFLVPLLTVRAGAITGSRSSLRVTSGTANISIAL 248
W ++ CP+ RS+ P PLL V GS S + +A++S+ +
Sbjct: 184 WLLSHSTCPLCRRSLLADFSPYGGGCSPLLFVLESGSEGSISDRLDAASSAHLSLVM 240
>07_01_0298 - 2158642-2158886,2159031-2159151
Length = 121
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -1
Query: 250 TSAMLIFAVPLVTLKLDLEPVIAPARTVRRGTRNAQTGGAGFGTLLAVIG 101
TS++LI V + + +APA RR R GG G L +++G
Sbjct: 21 TSSILIIVVEVEIETMGPHVSVAPAAVRRRRQRRLLQGGGGVEGLDSLVG 70
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 191 RLKIELKGDKRYCKYQHCTCEKSR 262
R K+E D CK HC C+KSR
Sbjct: 73 RQKVEESADGNGCK--HCACKKSR 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,142,071
Number of Sequences: 37544
Number of extensions: 312194
Number of successful extensions: 1330
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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