Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2065
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-5|CAA93739.2|  260|Caenorhabditis elegans Hypothetical pr...    64   6e-11
U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical pr...    58   4e-09
AL032637-20|CAA21612.2|  250|Caenorhabditis elegans Hypothetical...    46   1e-05
Z78060-1|CAB01491.1|   83|Caenorhabditis elegans Hypothetical pr...    37   0.007
Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical pr...    36   0.010
AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative tran...    36   0.010
AF101315-1|AAC69225.2|  369|Caenorhabditis elegans Hypothetical ...    33   0.068
Z78060-2|CAB01490.1|  114|Caenorhabditis elegans Hypothetical pr...    32   0.16 
AC006768-3|AAK70665.1|  246|Caenorhabditis elegans Hypothetical ...    30   0.83 
AC006768-2|AAF60574.1|  309|Caenorhabditis elegans Hypothetical ...    30   0.83 
U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna synt...    29   1.5  
AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical...    29   1.5  
AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA sy...    29   1.5  
U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF047653-6|AAC04462.2|  463|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z69883-5|CAA93739.2|  260|Caenorhabditis elegans Hypothetical
           protein C27C12.6 protein.
          Length = 260

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 28/48 (58%), Positives = 32/48 (66%)
 Frame = +2

Query: 164 PNCARWRNHRLKIELKGDKRYCKYQHCTCEKSRLTADRQGVMAKQTGI 307
           P CAR RNH L   LKG KR+CKY+ C CEK  L A+RQ VMA Q  +
Sbjct: 20  PKCARCRNHGLVSWLKGHKRHCKYKECACEKCNLIAERQRVMAAQVAL 67


>U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical
           protein F10C1.5 protein.
          Length = 280

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 25/48 (52%), Positives = 30/48 (62%)
 Frame = +2

Query: 164 PNCARWRNHRLKIELKGDKRYCKYQHCTCEKSRLTADRQGVMAKQTGI 307
           P CAR RNH     LKG KRYC+++ C C K  L A+RQ VMA Q  +
Sbjct: 31  PKCARCRNHGTTSALKGHKRYCQWKDCMCAKCTLIAERQRVMAAQVAL 78


>AL032637-20|CAA21612.2|  250|Caenorhabditis elegans Hypothetical
           protein Y43F8C.10 protein.
          Length = 250

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +2

Query: 164 PNCARWRNHRLKIELKGDKRYCKYQHCTCEKSRLTADRQGVMAKQ 298
           PNC R   H +   LKG KR C ++ C C K ++  +RQ +MA Q
Sbjct: 115 PNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVERQKLMADQ 159



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 170 CARWRNHRLKIELKGDKRYCKYQHCTCEKSRLTADRQ 280
           C R  NH L+ + K  K  C ++ C C    +   R+
Sbjct: 19  CQRCLNHGLREKRKNHKLSCTFRFCQCSNCIMVERRR 55


>Z78060-1|CAB01491.1|   83|Caenorhabditis elegans Hypothetical
           protein C34D1.1 protein.
          Length = 83

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 164 PNCARWRNHRLKIELKGDKRYCKYQHCTCEK 256
           PNC +   H  K  LKG KR C ++ C C K
Sbjct: 38  PNCQKCGQHGRKSRLKGHKRSCPFRECPCAK 68


>Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5a protein.
          Length = 290

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 164 PNCARWRNHRLKIELKGDKR-YCKYQHCTCEKSRLTADRQGVMAKQ 298
           P+CAR   H + + L+G KR  C++  C C    L   R+ +MA Q
Sbjct: 92  PHCARCSAHGVLVPLRGHKRTMCQFVTCECTLCTLVEHRRNLMAAQ 137



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 170 CARWRNHRLKIELKGDKRYCKYQHCTCEKSRLTADRQ 280
           C R  NH      KG K  C+Y  C C +  +   R+
Sbjct: 28  CQRCLNHGELKPRKGHKPDCRYLKCPCRECTMVEQRR 64


>AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative
           transcription factor MAB-3 protein.
          Length = 290

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 164 PNCARWRNHRLKIELKGDKR-YCKYQHCTCEKSRLTADRQGVMAKQ 298
           P+CAR   H + + L+G KR  C++  C C    L   R+ +MA Q
Sbjct: 92  PHCARCSAHGVLVPLRGHKRTMCQFVTCECTLCTLVEHRRNLMAAQ 137



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 170 CARWRNHRLKIELKGDKRYCKYQHCTCEKSRLTADRQ 280
           C R  NH      KG K  C+Y  C C +  +   R+
Sbjct: 28  CQRCLNHGELKPRKGHKPDCRYLKCPCRECTMVEQRR 64


>AF101315-1|AAC69225.2|  369|Caenorhabditis elegans Hypothetical
           protein T22H9.4 protein.
          Length = 369

 Score = 33.5 bits (73), Expect = 0.068
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 170 CARWRNHRLKIELKGDKRYCKYQHCTCEKSRLTADRQGV 286
           C + +NH + +  K  K+ C+Y  C C++  L   R+ +
Sbjct: 137 CQKCKNHNVLVWKKNHKKECQYSSCECQQCNLIDSRRAL 175



 Score = 31.9 bits (69), Expect = 0.21
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 167 NCARWRNHRLKIELKGDKRYCKYQHCTCEKSRLTADRQGVMAKQ 298
           +C   + H + +E +G    C+Y+ C CE+  L   R+ +M+ Q
Sbjct: 50  HCGMCKQHGVFVETRGHT--CEYRSCECEQCDLVRKRREIMSTQ 91


>Z78060-2|CAB01490.1|  114|Caenorhabditis elegans Hypothetical
           protein C34D1.2 protein.
          Length = 114

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 170 CARWRNHRLKIELKGDKRYCKYQHCTCEKSRLTADRQ 280
           C R  NH +    K  K  C Y  CTCEK  L   R+
Sbjct: 43  CQRCLNHDVPRPRKNHKCECPYADCTCEKCGLVEKRR 79


>AC006768-3|AAK70665.1|  246|Caenorhabditis elegans Hypothetical
           protein Y45G12B.2b protein.
          Length = 246

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 27  APTLPRIRATRTQQ-WCRWAHGNAACPMTARSVPNPAPP 140
           +P + ++R    Q  W R A G    P   R VP+PAPP
Sbjct: 49  SPLIEKLREQLKQSNWARAALGLPTLPELNRPVPSPAPP 87


>AC006768-2|AAF60574.1|  309|Caenorhabditis elegans Hypothetical
           protein Y45G12B.2a protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 27  APTLPRIRATRTQQ-WCRWAHGNAACPMTARSVPNPAPP 140
           +P + ++R    Q  W R A G    P   R VP+PAPP
Sbjct: 112 SPLIEKLREQLKQSNWARAALGLPTLPELNRPVPSPAPP 150


>U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna
           synthetase protein 1 protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 128 PGASSLGVPCAPPNCARWRNHRLKIELKGDKRYCKYQHCTCEKSRLTADRQGVMAKQT 301
           PG    G   +  NC  +++ RL I+ K      KY H TC  + L + R  +   +T
Sbjct: 350 PGRKLYGEVSSASNCTDFQSRRLGIKYKTADGTTKYAH-TCNGTALASTRALISVLET 406


>AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical
           protein B0238.9 protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 203 ELKGDKRYCKYQHCTCEKSRLTADRQGVMAKQTGI 307
           E KG     K+  C C++ ++T D+Q +  K+  +
Sbjct: 105 ERKGQSLIGKFCRCRCDRGQMTRDKQALYEKEKAV 139


>AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA
           synthetase protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 128 PGASSLGVPCAPPNCARWRNHRLKIELKGDKRYCKYQHCTCEKSRLTADRQGVMAKQT 301
           PG    G   +  NC  +++ RL I+ K      KY H TC  + L + R  +   +T
Sbjct: 350 PGRKLYGEVSSASNCTDFQSRRLGIKYKTADGTTKYAH-TCNGTALASTRALISVLET 406


>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
           protein K08B12.2a protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 170 CARWRNHRLKIELKGDKRYCKYQHCTCE 253
           C +   H  ++ LKG    C + +C+C+
Sbjct: 61  CRKCEGHGQQVVLKGHASRCPFNNCSCK 88


>AF047653-6|AAC04462.2|  463|Caenorhabditis elegans Hypothetical
           protein W02F12.5 protein.
          Length = 463

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 117 SVPNPAPPVWAFLVPLLTVRAGAITGSRSSLRVTSGTANISIA 245
           S P  A PV   +VP     + AITG+R  +RV +    + IA
Sbjct: 205 STPVGAVPVTRVVVPKGVDPSHAITGARDEVRVKANRMRMRIA 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,704,589
Number of Sequences: 27780
Number of extensions: 213870
Number of successful extensions: 650
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)