Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2065
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          30   0.010
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   4.5  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   4.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.0  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 30.3 bits (65), Expect = 0.010
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 239 HCTCEKSRLTADRQGVM 289
           +CTCEK ++TA+RQ VM
Sbjct: 3   YCTCEKCKITANRQQVM 19


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 209 KGDKRYCKYQHCTCEKSRLTADRQ 280
           K +K Y KY+  + E+SR   +R+
Sbjct: 51  KNEKEYRKYRETSKERSRDRTERE 74


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 209 KGDKRYCKYQHCTCEKSRLTADRQ 280
           K +K Y KY+  + E+SR   +R+
Sbjct: 51  KNEKEYRKYRERSKERSRDKRERE 74


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 209 KGDKRYCKYQHCTCEKSRLTADRQ 280
           K +K Y KY+  + E+SR   +R+
Sbjct: 51  KNEKEYRKYRERSKERSRDKRERE 74


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 141 VWAFLVPLLTVRAGAITGSRSSLRVTSGTANISIA 245
           +W   VPL        TG+  +LR+TS +  IS++
Sbjct: 860 IWLAFVPLYFG-----TGNNVALRITSMSVTISLS 889


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,126
Number of Sequences: 438
Number of extensions: 2598
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)