Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2059
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.67
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 27 2.1
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 27 2.7
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 27 2.7
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 4.7
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.7
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch... 26 4.7
SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr... 26 4.7
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.7
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 26 6.3
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce... 25 8.3
>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 29.1 bits (62), Expect = 0.67
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 128 NQISFRNPIYTSLVTRQILDYLCRD 54
NQ +NP+Y S VTRQ+ D + R+
Sbjct: 81 NQALMKNPLYVSNVTRQVRDAVQRE 105
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 530 HWALSCNFSDCSDL 571
HW LS NF DCS L
Sbjct: 77 HWFLSTNFQDCSTL 90
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +2
Query: 599 SLYVSLADRDITVAERITASKIMRTTSHLSLKR 697
S+Y+S ++DI++++ + S+ M+T L+ KR
Sbjct: 25 SIYLSRFEKDISISQTLDFSQFMQTQILLTAKR 57
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 70 SSIWRVTSEVYIGFRNEI*FQNESFGPLIIDIYYIAVYWW 189
++IW IG+R F E GPL+I +++I Y W
Sbjct: 70 ATIWVKDLGPQIGWRTV--FMIEYLGPLVIHLFFILNYKW 107
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 284 VTPPFKPKRITASRQK*AGWWYLLVRTHKSSYHQYTA 174
+T P P+ IT + GW Y+L R K +Y YTA
Sbjct: 1160 ITCPPLPENITNTEY---GWGYILTRAEKKAY--YTA 1191
>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 599 ISFRKLRYTSGHYSRKNCKTMPSVEYSLYILVQTYPPV 486
I F ++RYT+ H++R + K + S+ + PPV
Sbjct: 204 IFFLRMRYTNSHFTRASIKAV-SLRMDRLVADNRVPPV 240
>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 268 NRNALLLHGRNRQGGGIYSCGLTRVPTTSIQLYSI 164
N ++LHG N Q + +CGL V +++ + I
Sbjct: 106 NGELIVLHGINHQAAMLTACGLFMVTSSNTNKWKI 140
>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 323
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 128 NQISFRNPIYTSLVTRQI 75
NQ +NP+Y S VTRQ+
Sbjct: 81 NQALMKNPLYVSNVTRQV 98
>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = -1
Query: 273 LQTETHYCFTAEIGRVVVSTRADSQEFLPPVYSYIVYIYDKRPEALVLKSDLVSEPN 103
+ ++ + T ++ +V+ + ++ EF+P S D+ + + S L EPN
Sbjct: 14 IMPKSSFITTKQLWEIVLQGKVEATEFIPADVSDSTQTVDRSNKISPITSQLTIEPN 70
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 595 HSGSSDILQVTTV--GKIARQCPVLSTLCTSSFKRI 494
H+G +D++ + ++ GK+ S LC SSFK I
Sbjct: 279 HNGMADLVYLFSLFEGKVPETILEFSELCLSSFKSI 314
>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 214
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 114 SEPNIHFARHSPDTRLLMQRYQIIFHHHALSSMGDV 7
S PN+ SP+ + L++ QI+ H+ S + +V
Sbjct: 106 SHPNLLLYLSSPERQYLLRHQQIVHRHYMDSFLREV 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,415
Number of Sequences: 5004
Number of extensions: 67472
Number of successful extensions: 167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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