Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2059
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0264 + 17059279-17059638,17060226-17060260,17060307-170603...    28   6.5  
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     28   8.6  

>02_03_0264 +
           17059279-17059638,17060226-17060260,17060307-17060385,
           17060580-17061123,17061328-17061404
          Length = 364

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -3

Query: 646 SLCDCNVAISE*HVQRSHSGSSDILQVTTVGKIARQCPVLSTLCTSSFKRILPSQDSGVK 467
           ++ D   A+ E H+ +SHS +   ++V T    +     +S L  SSFK  L  + S ++
Sbjct: 259 NIVDGPKALCEYHLAKSHSNTPTSVKVATAHSKSCCTITMSHLLKSSFKPTLTGEASSLR 318

Query: 466 VS 461
            +
Sbjct: 319 AA 320


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 471 TPESCDGRIRLNEDVQRVLNTGHCL 545
           TPE  +G + LN  VQRVL+ G  L
Sbjct: 6   TPEQSNGSLTLNPVVQRVLSRGKSL 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,711,579
Number of Sequences: 37544
Number of extensions: 467000
Number of successful extensions: 1019
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)